SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.

Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.

DETRIM (DEtection of TRansient IMmobilization) is a robust, hierarchical DBSCAN-based algorithm designed to detect both long-lived and transient immobilization events in Single-Molecule Localization Microscopy (SMLM) data.

Computational tools for single molecule localization / superresolution microscopy (point clouds).

Multi-Orientation MAXWELL: A novel approach to three-dimensional super resolution mapping of X-ray excited, visible light emitting fluorophores using the X-ray Light Sheet Microscopy technique MAXWELL.

This repositiory contains jupyter notebooks for CNN Assisted PSF Localization (CAPL) scheme for localization microscopy

Single-Molecule Localization Microscopy scripts used in my report "Computational Methods in Single-Molecule Localization Microscopy"

GUI-based application implemented in MATLAB, designed for processing microscopy images. It sharpens images using frequency-domain deconvolution and then segments them based on multi-level thresholding to identify and mask distinct lipid phases.

PICCS is a spatial analysis algorithm implemented in MATLAB, designed specifically for Single-Molecule Localization Microscopy (SMLM) data. It quantifies the degree of co-localization or clustering between two molecular species by calculating and fitting the Cumulative Cross-Correlation Function according to the publication by Semrau et al. (2011).

DeepCEL0 for 2D Single Molecule Localization in Fluorescence Microscopy (2021)