build(deps): bump miniwdl from 1.7.0 to 1.13.1

[dependabot]

Bumps miniwdl from 1.7.0 to 1.13.1.

Release notes

Sourced from miniwdl's releases.

v1.13.1

This regular maintenance release addresses minor bugs and dependency issues.

• CLI: replace bullet with questionary (#777 @​bshifaw)
• make JSON pair definitions case-insensitive (#789 @​stxue1)
• fix asyncio.get_event_loop() error in newer Python versions (#791 #793 @​wleepang)
• migrate pkg_resources usage to importlib_metadata (#794 #802 @​hexylena)
• fix miniwdl configure --cfg FILENAME_IN_CWD.cfg (#805 @​hexylena)
• ensure static type error for unknown fields in struct literals (#808 @​gshiba)

Internal refactoring and implementation for WDL 1.2 continues in the background!

v1.13.0

Getting Started

v1.13.0 addresses several WDL 1.1 spec interoperability issues, with thanks to the reporting community members.

⚠️ These changes, while improving WDL spec compliance, bear slightly elevated risks of backwards-incompatibility with prior miniwdl versions. Please report any issues or unexpected behaviors for investigation.

Interoperability

• dedent task commands before eval/interpolation (#674 @​adamnovak)
• allow float values for task runtime.cpu (#690 @​adamnovak)
• round() "half up" instead of "to even" (#698 @​stxue1)
• fix Array runtime typing issues (#699 #700 @​stxue1)
• allow trailing commas in meta arrays (#708 @​adthrasher)
• fix ValueError reading empty JSON into Map (#726 @​ahvigil)
• refactor typechecking for equatability & comparability (#736)
• allow non-typesafe read_json(...) within arrays and if-then-else branches (#740 @​ahvigil)

Runner

• allow namespace prefix in task-only input JSON files (#693 @​stxue1)
• fix cache of task with empty outputs (#715 @​adamnovak)
• fix recognition of exponential notation in JSON/YAML run input files (#717 @​sach244n)
• --no-quant-check applies to comparison operators (#752 @​stxue1)

Python WDL API

• Multi-line strings (development/1.2 feature) get first-class AST representation as WDL.Expr.MultiLineString, which is dedented upon evaluation (instead of during parsing into WDL.Expr.String).
• WDL.Type.* classes expose ty1.equatable(ty2) and ty1.comparable(ty2) operators, indicating whether it is valid to use the WDL == != or < <= > >= operators, respectively.

v1.13.0rc0

v1.13.0 addresses several WDL 1.1 spec interoperability issues, with thanks to the reporting community members.

Because these changes bear small backwards-compatibility risks, we begin with release candidate v1.13.0rc0 that must be expressly requested with: pip install miniwdl==1.13.0rc0. Please report any issues or unexpected behaviors for investigation over the next few weeks.

Interoperability

• dedent task commands before eval/interpolation (#674 @​adamnovak)

... (truncated)

Commits

• ea178fe static type error for unknown fields in struct literals
• d5b0d09 update docker dependencies
• e2dddd8 upgrade to lark~=1.3
• b540e7c retire use of pkg_resources (in miniwdl --version)
• 0fa23a5 switch CLI from bullet (unmaintained) to questionary
• 09e0ced fix `miniwdl configure --cfg JUST_FILENAME (#813)
• 5cc2cb4 free more disk space in CI
• ea66580 chore: CCIE-4984 conform to open sourcing guidelines (#801)
• 6d2eea4 chore: CCIE-4984 conform to open sourcing guidelines (#798)
• 36be07f [WDL 1.2] task requirements section (#796)
• Additional commits viewable in compare view

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