Bump scikit-learn from 0.24.2 to 1.5.1 in /tests

.github/workflows/check_links.yml

@@ -1,6 +1,6 @@
 name: Check Links
 
-on: 
+on:
   schedule:
     - cron: '45 01 30 * *'
   pull_request:
@@ -18,12 +18,16 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.x'
+        python-version: '3.11'
+
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v5
+
+    - name: Create virtual environment
+      run: uv venv
 
     - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install pytest pytest-xdist requests jupyter lxml numpy matplotlib scipy sympy
+      run: uv pip install pytest pytest-xdist requests jupyter lxml numpy matplotlib scipy sympy
 
     - name: Check links
-      run: python -m pytest -n auto ./tests/test_check_links_in_ipynb.py ./utils/tests/
+      run: uv run pytest -n auto ./tests/test_check_links_in_ipynb.py ./utils/tests/

.github/workflows/conda_env_test.yml

@@ -1,10 +1,19 @@
 name: CI
 
-on: 
+on:
+  schedule:
+    - cron: '45 01 30 * *'
+
   push:
+
   pull_request:
+    branches: [main]
+
+  fork:
+
   workflow_dispatch:
 
+
 jobs:
   badges:
     name: Add Google Colab Badges
@@ -19,45 +28,56 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v5
       with:
-        python-version: '3.x'
+        python-version: '3.11'
+
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v5
+
+    - name: Create virtual environment
+      run: uv venv
 
     - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install bs4 jupyter lxml
+      run: uv pip install beautifulsoup4 jupyter lxml
 
     - name: Add/Update badges
-      run: python ./utils/add_colab_main_buttons.py
+      run: uv run python ./utils/add_colab_main_buttons.py
 
     - name: Commit & push
       uses: stefanzweifel/git-auto-commit-action@v5
       with:
-        commit_message: "Add Google Colab badges"
+        commit_message: "Clean ipynb ${{ github.sha }}"
 
   test_ipynb:
     needs: badges
-    name: Test ipynb with Anaconda ${{ matrix.anaconda }}
+    name: Test ipynb on ${{ matrix.environment.name }} of ${{ matrix.os }}
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        anaconda: ["2021.11", "nightly"]
+        environment:
+          - {name: '2021.11', python-version: "3.9.4"}
+          - {name: '2020.10', python-version: "3.10"}
+          - {name: 'nightly', python-version: "3"}
+        os: [ubuntu-latest, macos-latest, windows-latest,]
       fail-fast: false
     timeout-minutes: 30
     steps:
     - name: Checkout
       uses: actions/checkout@v4
 
-    - name: Set up Miniconda
-      uses: conda-incubator/setup-miniconda@v3
-      with:
-        auto-update-conda: true
-        miniconda-version: "latest"
-        environment-file: ./tests/environment.${{ matrix.anaconda }}.yml
-        activate-environment: test-environment
+    - name: Set up uv
+      uses: astral-sh/setup-uv@v5
+
+    - name: Create virtual environment
+      run: uv venv test-env-${{ matrix.environment.name }} --python ${{ matrix.environment.python-version }}
+
+    - name: Install dependencies
+      run: |
+        source test-env-${{ matrix.environment.name }}/bin/activate
+        uv pip install -r tests/requirements.${{ matrix.environment.name }}.txt
 
     - name: Run tests
-      shell: bash -l {0}
       env:
         TEST_IPYNB_IGNORE_FOLDER: tutorial
       run: |
-        pytest --numprocesses=auto -k 'not (links or update_nmisp_py)' tests/
+        source test-env-${{ matrix.environment.name }}/bin/activate
+        uv run pytest --numprocesses=auto -k 'not (links or update_nmisp_py)' tests/

00.python-c-cpp/00.python.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/00.python-c-cpp/00.python.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/00.python-c-cpp/00.python.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

00.python-c-cpp/10.c-cpp.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/00.python-c-cpp/10.c-cpp.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/00.python-c-cpp/10.c-cpp.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

00.python-c-cpp/20.bash.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/00.python-c-cpp/20.bash.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/00.python-c-cpp/20.bash.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

10.data-types-and-operators/00.git.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/10.data-types-and-operators/00.git.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/10.data-types-and-operators/00.git.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

10.data-types-and-operators/10.types.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/10.data-types-and-operators/10.types.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/10.data-types-and-operators/10.types.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

10.data-types-and-operators/20.operators.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/10.data-types-and-operators/20.operators.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/10.data-types-and-operators/20.operators.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

20.control-flow/00.if.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/20.control-flow/00.if.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/20.control-flow/00.if.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

20.control-flow/10.for-while.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/20.control-flow/10.for-while.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/20.control-flow/10.for-while.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

20.control-flow/20.functions.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/20.control-flow/20.functions.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/20.control-flow/20.functions.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

30.pointers-and-memory-management/00.pointers.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/30.pointers-and-memory-management/00.pointers.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/30.pointers-and-memory-management/00.pointers.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

30.pointers-and-memory-management/10.calloc-free.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/30.pointers-and-memory-management/10.calloc-free.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/30.pointers-and-memory-management/10.calloc-free.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

30.pointers-and-memory-management/20.python.list-reference.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/30.pointers-and-memory-management/20.python.list-reference.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/30.pointers-and-memory-management/20.python.list-reference.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

40.object-oriented-programming/00.module-namespace.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/40.object-oriented-programming/00.module-namespace.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/40.object-oriented-programming/00.module-namespace.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

40.object-oriented-programming/10.class.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/40.object-oriented-programming/10.class.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/40.object-oriented-programming/10.class.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

40.object-oriented-programming/20.private-protected-public.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/40.object-oriented-programming/20.private-protected-public.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/40.object-oriented-programming/20.private-protected-public.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

40.object-oriented-programming/30.state-space-in-class.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/40.object-oriented-programming/30.state-space-in-class.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/40.object-oriented-programming/30.state-space-in-class.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

40.object-oriented-programming/40.dataclasses.dataclass.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/40.object-oriented-programming/40.dataclasses.dataclass.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/40.object-oriented-programming/40.dataclasses.dataclass.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

50.under-the-hood/00.gdb.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/50.under-the-hood/00.gdb.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/50.under-the-hood/00.gdb.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

50.under-the-hood/10.cython.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/50.under-the-hood/10.cython.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/50.under-the-hood/10.cython.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

50.under-the-hood/22.working_with_bits_operators.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/50.under-the-hood/22.working_with_bits_operators.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/50.under-the-hood/22.working_with_bits_operators.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

50.under-the-hood/24.working_with_bits_operators_results.md

@@ -1,5 +1,5 @@
 * Let's take a look at the assembly instructions.
-``` 
+```
   24:bitwise_16bit_color.cpp ****         uint32_t hex = 0;
  565                            .loc 6 24 0
  566 00cf C745C400              movl    $0, -60(%rbp)

50.under-the-hood/28.working_with_bits_struct_union.ipynb

@@ -7,7 +7,7 @@
     "colab_type": "text"
    },
    "source": [
-    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/main/50.under-the-hood/28.working_with_bits_struct_union.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
+    "<a href=\"https://colab.research.google.com/github/kangwonlee/2018pycpp/blob/dependabot/pip/tests/scikit-learn-1.5.1/50.under-the-hood/28.working_with_bits_struct_union.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>\n"
    ]
   },
   {

tests/check_links_in_ipynb.py

@@ -72,5 +72,5 @@ def check_links_in_ipynb_cells_list(cells_list):
 
         # check simple urls
         check_link_in_cell(cell, rs)
-        # check urls linked to 
+        # check urls linked to
         check_link_in_cell(cell, ri)

tests/get_cpp_from_ipynb.py

@@ -28,7 +28,7 @@ def is_markdown_cpp_src(ipynb_cell):
         src = ipynb_cell['source'].strip()
 
         # Multiline code block within ```'s
-        if (src.startswith('```') 
+        if (src.startswith('```')
             and src.endswith('```')):
 
             # check C++ right after ```
@@ -100,7 +100,7 @@ def get_build_command_in_last_line(cpp_txt):
             if 4 < len(line.lower().split()):
                 # Check words
                 if (
-                    ('build' == line.lower().split()[1]) 
+                    ('build' == line.lower().split()[1])
                     and ('command' == line.lower().split()[2])
                     and (':' == line.lower().split()[3])
                 ):

tests/requirements.2021.11.txt

@@ -0,0 +1,17 @@
+# python==3.9.4
+cython==0.29.24
+jupyter==1.0.0
+lxml==4.6.3
+matplotlib==3.4.3
+numpy==1.20.3
+pandas==1.3.4
+pandas-datareader==0.10.0
+pytest==6.2.4
+pytest-xdist==2.3.0
+requests==2.26.0
+scikit-learn==1.5.1
+scipy==1.7.1
+seaborn==0.11.2
+statsmodels==0.12.2
+sympy==1.9
+xlwt==1.3.0

tests/requirements.2022.10.txt

@@ -0,0 +1,17 @@
+# python==3.10
+cython==0.29.32
+jupyter==1.0.0
+lxml==4.9.1
+matplotlib==3.5.2
+numpy==1.21.5
+pandas==1.4.4
+pandas-datareader==0.10.0
+pytest==7.1.2
+pytest-xdist==2.5.0
+requests==2.28.1
+scikit-learn==1.5.1
+scipy==1.9.1
+seaborn==0.11.2
+statsmodels==0.13.2
+sympy==1.10.1
+xlwt==1.3.0