Updated plugins and GitHub actions

.github/actions/assemble-test-reports/action.yml

@@ -16,7 +16,7 @@ runs:
   using: "composite"
   steps:
     - name: Checkout repository
-      uses: actions/checkout@v4
+      uses: actions/checkout@v6
       with:
         fetch-depth: 1
 
@@ -54,13 +54,13 @@ runs:
         ./codecov -t ${{ inputs.CODECOV_TOKEN }} -R ${{ github.workspace }}/hapi-fhir-jacoco/target/site/jacoco-aggregate/
 
     - name: Publish test results
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v5
       with:
         name: junit-test-results
         path: './**/TEST-*.xml'
 
     - name: Publish code coverage report
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v5
       with:
         name: code-coverage
         path: ${{ github.workspace }}/hapi-fhir-jacoco/target/site/jacoco-aggregate/jacoco.xml

.github/actions/build-cache/action.yml

@@ -14,7 +14,7 @@ runs:
   using: "composite"
   steps:
     - name: Set up JDK ${{ inputs.java-version }}
-      uses: actions/setup-java@v4
+      uses: actions/setup-java@v5
       with:
         java-version: ${{ inputs.java-version }}
         distribution: "temurin"

.github/actions/build-module/action.yml

@@ -20,7 +20,7 @@ runs:
         fetch-depth: 1
 
     - name: Set up Java 17
-      uses: actions/setup-java@v3
+      uses: actions/setup-java@v5
       with:
         distribution: 'temurin'
         java-version: '17'

.github/actions/checkstyle-validation/action.yml

@@ -32,7 +32,7 @@ runs:
         key: ${{ inputs.hapi-cache-key }}
 
     - name: Set up JDK
-      uses: actions/setup-java@v4
+      uses: actions/setup-java@v5
       with:
         distribution: 'temurin'
         java-version: ${{ inputs.java-version }}

.github/actions/generate-module-list/action.yml

@@ -16,7 +16,7 @@ runs:
       uses: actions/checkout@v4
 
     - name: Set up JDK 17
-      uses: actions/setup-java@v4
+      uses: actions/setup-java@v5
       with:
         distribution: 'adopt'
         java-version: '17'

.github/actions/run-tests-and-archive-results/action.yml

@@ -18,7 +18,7 @@ runs:
   using: "composite"
   steps:
     - name: Set up JDK ${{ inputs.java-version }}
-      uses: actions/setup-java@v4
+      uses: actions/setup-java@v5
       with:
         java-version: ${{ inputs.java-version }}
         distribution: 'temurin'
@@ -59,7 +59,7 @@ runs:
         echo "sanitized_name=$sanitized_name" >> $GITHUB_ENV
 
     - name: Upload target Directory
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v5
       with:
         name: ${{ env.sanitized_name }}
         path: '**/target/**'

.github/workflows/codeql-analysis.yml

@@ -13,7 +13,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v6
         with:
           # We must fetch at least the immediate parents so that if this is
           # a pull request then we can checkout the head.
@@ -25,7 +25,7 @@ jobs:
         if: ${{ github.event_name == 'pull_request' }}
 
       - name: Setup java
-        uses: actions/setup-java@v3
+        uses: actions/setup-java@v5
         with:
           distribution: zulu
           java-version: 17

.github/workflows/compile_against_cdr.yml

@@ -18,17 +18,17 @@ jobs:
         if: ${{ github.event.pull_request.head.repo.full_name != github.repository }}
         run: echo "Skipping CDR compilation for fork - this is expected and safe"
 
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v6
         if: ${{ github.event.pull_request.head.repo.full_name == github.repository }}
         name: Checkout
       - name: Install poetry
         if: ${{ github.event.pull_request.head.repo.full_name == github.repository }}
         run: pipx install poetry
       - name: Setup Python
         if: ${{ github.event.pull_request.head.repo.full_name == github.repository }}
-        uses: actions/setup-python@v4.6.0
+        uses: actions/setup-python@v6
         with:
-          python-version: '3.10'
+          python-version: '3.14'
       - run: poetry install
         if: ${{ github.event.pull_request.head.repo.full_name == github.repository }}
         name: Install Dependencies

.github/workflows/parallel-pipeline-build.yml

@@ -17,7 +17,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
 
       - name: Build the Maven cache
         id: cache-maven
@@ -32,7 +32,7 @@ jobs:
     continue-on-error: true
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
 
       - name: Run Checkstyle Validation
         uses: ./.github/actions/checkstyle-validation
@@ -50,7 +50,7 @@ jobs:
       modules_list: ${{ steps.format-modules.outputs.modules_list }}
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
 
       - name: Generate Modules List
         id: generate_list
@@ -82,7 +82,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
 
       - name: Run Tests and Archive Results
         uses: ./.github/actions/run-tests-and-archive-results
@@ -99,7 +99,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
 
       - name: Assemble Reports
         uses: ./.github/actions/assemble-test-reports

.github/workflows/pull-request.yml

@@ -12,11 +12,11 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
 
       - name: Install yq
         run: |
-          sudo wget https://github.com/mikefarah/yq/releases/download/v4.40.5/yq_linux_amd64 -O /usr/bin/yq
+          sudo wget https://github.com/mikefarah/yq/releases/download/v4.49.1/yq_linux_amd64 -O /usr/bin/yq
           sudo chmod +x /usr/bin/yq
 
       - name: Load ignored modules from config

.github/workflows/release.yml

@@ -12,10 +12,10 @@ jobs:
 
     steps:
       - name: Checkout code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v6
 
       - name: Set up JDK
-        uses: actions/setup-java@v4
+        uses: actions/setup-java@v5
         with:
           distribution: 'temurin'
           java-version: '17'
@@ -45,11 +45,11 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v6
 
       - name: Load ignored modules from config
         id: load_config
-        uses: mikefarah/yq@v4.40.5
+        uses: mikefarah/yq@v4.49.1
         with:
           cmd: >
             echo "ignored_modules=$(yq '.ignored_modules' .github/config/ignored-modules.yml | tr -d '"')" >> $GITHUB_OUTPUT

.github/workflows/spotless.yml

@@ -11,9 +11,9 @@ jobs:
     permissions:
       pull-requests: write
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v6
       - name: Set up JDK 17
-        uses: actions/setup-java@v3
+        uses: actions/setup-java@v5
         with:
           java-version: '17'
           distribution: 'temurin'

hapi-fhir-android/.gitignore

@@ -0,0 +1 @@
+

hapi-fhir-jpaserver-uhnfhirtest/.gitignore

@@ -127,4 +127,3 @@ local.properties
 
 # TeXlipse plugin
 .texlipse
-