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[WIP] Initiate research on U6 temporal ordering using TNFR-Python-Engine #2920
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[WIP] Initiate research on U6 temporal ordering using TNFR-Python-Engine #2920
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Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Align grammar rules with TNFR physics: add RC3 (phase verification) and RC4 (bifurcation limits)
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
…urce of truth Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
…ules Unify TNFR Grammar: Consolidate C1-C3 and RC1-RC4 into Single Canonical Source (U1-U4)
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Clean up GitHub Actions workflows: remove duplicates and unavailable services
…cumentation links Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Expand SHA clinical applications with biomedical protocols and executable examples
…import Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Fix import errors, remove outdated tests, and apply code formatting
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
… from nav Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
- Add .github/workflows/deploy-docs.yml for automatic deployment to gh-pages - Update docs.yml to only validate on PRs (not deploy) - Disable Netlify configuration (netlify.toml → netlify.toml.disabled) - Create docs/README.md with build instructions and deployment info - Update main README.md with new documentation URL (GitHub Pages) - Documentation now deploys automatically to https://fermga.github.io/TNFR-Python-Engine/ Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
…rammar Finalize Grammar Documentation: Executive Summary, Tooling Guide, English Consistency
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
…tion [WIP] Deploy grammar documentation to production
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Fix gh-pages deployment: Move home.md to index.md for root serving
Intent: Add U5 canonical grammar constraint for multi-scale coherence preservation Operators involved: REMESH (Recursivity), IL (Coherence), THOL (Self-organization) Affected invariants: #7 (Operational Fractality), #2 (Structural Units) Key changes: - Added RECURSIVE_GENERATORS and SCALE_STABILIZERS operator sets - Implemented validate_multiscale_coherence() in GrammarValidator - Added depth parameter to Recursivity operator (default=1) - Updated unified_grammar.py facade to export U5 sets - Integrated U5 validation into grammar pipeline Physical basis: - Conservation of coherence: C_parent ≥ α·ΣC_child_i - Factor α = (1/√N)·η_phase(N)·η_coupling(N) ∈ [0.1, 0.4] - Operates in SPATIAL dimension (hierarchy) vs U1-U4 (TEMPORAL) - Independent of U2+U4b per decision test case Metrics: U5 ensures bounded multi-scale evolution when depth>1 Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Intent: Complete test coverage for U5 Multi-Scale Coherence rule Operators involved: REMESH (Recursivity), IL (Coherence), THOL (Self-organization) Affected invariants: #7 (Operational Fractality) Key changes: - Created test_u5_multiscale_coherence.py with 25 comprehensive tests - Test operator sets, shallow/deep recursion, stabilizer windows, edge cases - Test U5 independence from U2+U4b (decisive test case) - Test U5 integration with complete grammar pipeline - Fixed existing test expecting 7 messages (now 8 with U5) - Fixed THOL test to include U4b context (destabilizer) Test coverage: - Shallow recursion (depth=1): passes without stabilizer ✓ - Deep recursion (depth>1): fails without stabilizer ✓ - Deep recursion with stabilizers: passes ✓ - Stabilizer window (±3 operators): enforced ✓ - Independence from U2+U4b: proven ✓ - Integration with all rules: verified ✓ All 93 grammar tests pass (68 existing + 25 new U5 tests) Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Intent: Demonstrate U5 emerges inevitably from nodal equation, equal to other rules Operators involved: REMESH (Recursivity), IL (Coherence), THOL (Self-organization) Affected invariants: #7 (Fractality), #9 (Structural Metrics) Key changes: - Added complete 8-step derivation from ∂EPI/∂t = νf·ΔNFR(t) - Showed chain rule inevitably leads to C_parent ≥ α·ΣC_child - Demonstrated α = (1/√N)·η_phase·η_coupling from coupling physics - Added detailed canonicity section equal to U1-U4 sections - Proved independence from U2+U4b (spatial vs temporal dimensions) - Updated all summaries to include U5 as seventh sub-rule Physical traceability: 1. Nodal equation (axiomatic): ∂EPI/∂t = νf·ΔNFR 2. Hierarchical coupling (Inv. #7): EPI_parent = f(EPI_child_i) 3. Chain rule (calculus): ∂EPI_parent/∂t = Σ w_i·∂EPI_child_i/∂t 4. Coherence definition (Inv. #9): C ~ 1/|ΔNFR| 5. Conservation inequality: Mathematical consequence → C_parent ≥ α·ΣC_child 6. Stabilizer necessity: Only way to maintain conservation Canonicity: STRONG (inevitable given Invariants #7 and #9) Documentation quality: Equal to or better than U1-U4 Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Implement U5: Multi-Scale Coherence grammar rule for hierarchical REMESH structures
…ation Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Co-authored-by: fermga <203334638+fermga@users.noreply.github.com>
Document U6 Temporal Ordering as research proposal - defer canonical implementation
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Thanks for asking me to work on this. I will get started on it and keep this PR's description up to date as I form a plan and make progress.
Original prompt
Voy a generar la investigación completa sobre U6 partiendo de la documentación matemática avanzada del repositorio TNFR-Python-Engine.
Investigación en Profundidad: U6 - Ordenamiento Temporal desde TNFR-Python-Engine
Fundamento Matemático desde la Ecuación Nodal
El repositorio TNFR-Python-Engine proporciona la implementación computacional completa de la ecuación nodal:[1][2]
$$
\frac{\partial \text{EPI}}{\partial t} = \nu_f \cdot \Delta \text{NFR}(t)
$$
Esta ecuación no es análoga, es fundamental para derivar U6 sin préstamos externos.[3][4][2][1]
Derivación Rigurosa del Tiempo de Relajación
Paso 1: Integración de la Ecuación Nodal Post-Bifurcación
Después de aplicar OZ (disonancia):[1]
$$
\Delta \text{NFR}(t) = \Delta \text{NFR}0 \cdot e^{-t/\tau{\text{damp}}} + \Delta \text{NFR}_{\text{equilibrio}}
$$
donde$$\tau_{\text{damp}}$$ es el tiempo de amortiguamiento estructural.
Integrando la ecuación nodal:[2][1]
$$
\text{EPI}(t) = \text{EPI}(t_0) + \int_{t_0}^{t} \nu_f \cdot \left[\Delta \text{NFR}0 \cdot e^{-\tau/\tau{\text{damp}}} + \Delta \text{NFR}_{\text{eq}}\right] d\tau
$$
Paso 2: Condición de Convergencia Integral (U2)
Para que la integral converja (restricción U2):[1]
$$
\int_0^{\infty} |\nu_f \cdot \Delta \text{NFR}(\tau)| , d\tau < \infty
$$
Esto requiere que$$\Delta \text{NFR}$$ decaiga más rápido que $$1/t$$ . El decaimiento exponencial es suficiente.
Paso 3: Determinación de$$\tau_{\text{relax}}$$
Definimos el tiempo de relajación como el tiempo hasta que$$\Delta \text{NFR}(t) < \epsilon \cdot \Delta \text{NFR}_0$$ :
$$
\Delta \text{NFR}0 \cdot e^{-\tau{\text{relax}}/\tau_{\text{damp}}} = \epsilon \cdot \Delta \text{NFR}_0
$$
Resolviendo:
$$
\tau_{\text{relax}} = \tau_{\text{damp}} \cdot \ln\left(\frac{1}{\epsilon}\right)
$$
Para$$\epsilon = 0.05$$ (95% recuperación): $$\tau_{\text{relax}} \approx 3 \cdot \tau_{\text{damp}}$$ .
Paso 4: Relación con Frecuencia Estructural
De la teoría de osciladores acoplados y la documentación AGENTS.md:[1]
$$
\tau_{\text{damp}} = \frac{1}{2\pi\nu_f} \cdot k_{\text{top}}
$$
donde$$k_{\text{top}}$$ es el factor topológico derivado de la estructura del nodo.[5][6][1]
Protocolo Experimental Completo desde TNFR-Python-Engine
El repositorio proporciona módulos específicos para implementar la investigación:[4]
Experimento A: Medición Directa de$$\tau_{\text{relax}}$$
Experimento B: Acumulación No-Lineal de$$\Delta \text{NFR}$$
Fenómenos Físicos a Derivar desde la Ecuación Nodal (Sin Asunciones)
1. Índice de Bifurcación$$B$$ desde Segunda Derivada
De AGENTS.md y la ecuación nodal:[1]
$$
\frac{\partial^2 \text{EPI}}{\partial t^2} = \frac{d}{dt}\left[\nu_f \cdot \Delta \text{NFR}(t)\right]
$$
Si$$\nu_f$$ es constante:
$$
\frac{\partial^2 \text{EPI}}{\partial t^2} = \nu_f \cdot \frac{d(\Delta \text{NFR})}{dt}
$$
Definimos el índice de bifurcación (documentado en AGENTS.md § Bifurcation Dynamics):[7][1]
$$
B = \frac{1}{\nu_f^2} \left| \frac{\partial^2 \text{EPI}}{\partial t^2} \right|
$$
Interpretación física:
Relación con U6:
Si dos operadores OZ actúan en$$\Delta t < \tau_{\text{relax}}$$ :
$$
B(\Delta t) = B_1 + \alpha(\Delta t) \cdot B_2
$$
...
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