Add support for Cell Ranger#101

Merged

arteymix merged 46 commits intomasterfrom

feature-cell-ranger

Nov 12, 2025

Commits on Sep 24, 2025

Commits on Sep 25, 2025

Do not open the browser in Google OAuth flow
arteymix
committed

Commits on Oct 9, 2025

Commits on Oct 20, 2025

Add wrapped tools
arteymix
committed

Commits on Oct 22, 2025

Rename wrapped tools config section
arteymix
committed

Commits on Oct 26, 2025

Commits on Oct 27, 2025

Make it possible to delete an entire run directory instead of individual files
arteymix
committed
sra: Include the SRA run identifier when dumping FASTQ files from a BAM
arteymix
committed
Reduce the amount of configuration needed for the pipeline
arteymix
committed

Commits on Nov 1, 2025

Remove the timelimit for CellRanger count
arteymix
committed