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Kalan-Lab

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  1. zol zol Public

    zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

    Python 70 5

  2. lsaBGC lsaBGC Public

    lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

    Python 40 4

  3. lsaBGC-Pan lsaBGC-Pan Public

    lsaBGC - suite for pan-BGC-omics analysis

    Python 22 2

  4. codoff codoff Public

    codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the full genome.

    Python 13 1

  5. Bioassay-ML-Image-Classification Bioassay-ML-Image-Classification Public

    This repository contains a script for training a machine learning model to classify images into categories. The model is trained on custom images provided by the user.

    Jupyter Notebook 1

  6. Swaney_etal_CobamidePaper Swaney_etal_CobamidePaper Public

    Code for data analysis and visualization in Swaney et al. mSystems 2022

    R

Repositories

Showing 10 of 18 repositories
  • zol Public

    zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

    Kalan-Lab/zol’s past year of commit activity
    Python 70 BSD-3-Clause 5 2 0 Updated Dec 28, 2025
  • Ancestral_BGC_Exansions_Study Public

    Code and datasets for analyses featured in Salamzade, Kalan, and Currie, 2025

    Kalan-Lab/Ancestral_BGC_Exansions_Study’s past year of commit activity
    HTML 0 BSD-3-Clause 0 0 0 Updated Dec 17, 2025
  • lsaBGC-Pan Public

    lsaBGC - suite for pan-BGC-omics analysis

    Kalan-Lab/lsaBGC-Pan’s past year of commit activity
    Python 22 BSD-3-Clause 2 2 0 Updated Nov 21, 2025
  • SkinBioassayStudy Public

    Code and data for Kalan lab skin bioassay project

    Kalan-Lab/SkinBioassayStudy’s past year of commit activity
    R 0 BSD-3-Clause 0 0 0 Updated Nov 17, 2025
  • codoff Public

    codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the full genome.

    Kalan-Lab/codoff’s past year of commit activity
    Python 13 BSD-3-Clause 1 0 0 Updated Nov 12, 2025
  • lsaBGC Public

    lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

    Kalan-Lab/lsaBGC’s past year of commit activity
    Python 40 BSD-3-Clause 4 0 0 Updated Sep 28, 2025
  • Townsend_etal_ExVivoPorcineSkinCHG Public

    Code for data analysis and figures for the manuscript Establishing an ex vivo porcine skin model to investigate the effects of chlorhexidine gluconate antiseptic on viable skin microbial communities."

    Kalan-Lab/Townsend_etal_ExVivoPorcineSkinCHG’s past year of commit activity
    R 0 0 0 0 Updated Jun 27, 2025
  • Salamzade_Kalan_BGC_Evolution_Review Public

    Code for small (re-)analyses for the Salamzade & Kalan minireview on BGC evolution

    Kalan-Lab/Salamzade_Kalan_BGC_Evolution_Review’s past year of commit activity
    R 0 BSD-3-Clause 0 0 0 Updated Jan 10, 2025
  • Salamzade_etal_zol Public

    Misc. code & scripts associated with the zol & fai manuscript.

    Kalan-Lab/Salamzade_etal_zol’s past year of commit activity
    HTML 0 BSD-3-Clause 0 0 0 Updated Dec 4, 2024
  • Bioassay-ML-Image-Classification Public

    This repository contains a script for training a machine learning model to classify images into categories. The model is trained on custom images provided by the user.

    Kalan-Lab/Bioassay-ML-Image-Classification’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 2, 2024
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