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Version 1.0.3

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@ValeSora ValeSora released this 23 Jul 09:23
· 34 commits to main since this release
v1.0.3
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[v1.0.3] - 2024-07-23

Several updates to the Recount3 sub-package.

Other changes:

  • Fixed a bug with the bulkDGD.util.get_handlers function.

  • Removed the batch number from the name of the output files in dgd_get_recount3_data.

Internal changes (for contributors):

  • The recount3.util._check_category function was removed (together with the associated recount3.defaults.RECOUNT3_SUPPORTED_CATEGORIES_FILE value the text files in recount3/data used for checking) because it added an unnecessary layer of complexity (the download will fail anyway and will report the error if the GTEx/TCGA/SRA code is incorrect).
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