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lines changed Original file line number Diff line number Diff line change 11dist : xenial
22language : r
3+ latex : false
34
45r :
56 - release
@@ -13,13 +14,6 @@ addons:
1314cache :
1415 packages : true
1516
16- python :
17- - ' 3.7'
18-
19- install :
20- - pip install SigProfilerMatrixGenerator
21-
22-
2317warnings_are_errors : false
2418
2519script : R -f test.R
Original file line number Diff line number Diff line change 11library(devtools )
22install_github(" AlexandrovLab/SigProfilerMatrixGeneratorR@development" )
33
4- library(reticulate )
5- py_config()
6-
74library(SigProfilerMatrixGeneratorR )
8-
9- cnv <- CNVMatrixGenerator(" BATTENBERG" ,
10- " ./test_data/CNV/Battenberg_test.tsv" ,
11- " test_CNV" ,
12- " ./test_data/output_CNV" )
13-
14-
15- sv <- SVMatrixGenerator(" ./test_data/SV" ,
16- " test_CNV" ,
17- " ./test_data/output_SV" )
18-
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