Add cnv & sv tests

Author: marcos-diazg

.travis.yml

@@ -13,6 +13,13 @@ addons:
 cache:
   packages: true
 
+python:
+  - '3.7'
+
+install:
+  - pip install SigProfilerMatrixGenerator
+
+
 warnings_are_errors: false
 
 script: R -f test.R

test.R

@@ -1,3 +1,18 @@
 library(devtools)
-devtools::install_github("AlexandrovLab/SigProfilerMatrixGeneratorR@development")
-library(SigProfilerMatrixGeneratorR)
+install_github("AlexandrovLab/SigProfilerMatrixGeneratorR@development")
+
+library(reticulate)
+py_config()
+
+library(SigProfilerMatrixGeneratorR)
+
+cnv <- CNVMatrixGenerator("BATTENBERG",
+                          "./test_data/CNV/Battenberg_test.tsv",
+                          "test_CNV",
+                          "./test_data/output_CNV")
+
+
+sv <- SVMatrixGenerator("./test_data/SV",
+                          "test_CNV",
+                          "./test_data/output_SV")
+