gh-41253: Restrict Cython's version and fix the uv building workflows

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Relate to #41137, these two functions are only support on cython>=3.1.0
@tobiasdiez Can you help me upgrade uv lock file? I use conda but not
uv.
cython/cython@b684235
f7e096f6

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### ⌛ Dependencies

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URL: #41253
Reported by: Chenxin Zhong
Reviewer(s): Tobias Diez

Author: Release Manager

.github/workflows/ci.yml

@@ -53,11 +53,10 @@ jobs:
           fi
 
       - name: Checkout code
-        # cannot use v4 yet because of https://github.com/actions/checkout/issues/1487
-        uses: actions/checkout@v3
+        uses: actions/checkout@v6.0.1
 
       - name: Install uv
-        uses: astral-sh/setup-uv@v6.7.0
+        uses: astral-sh/setup-uv@v7.1.4
 
       # We cannot use the setup python action because it doesn't support all containers
       # https://github.com/actions/setup-python/issues/527
@@ -95,8 +94,8 @@ jobs:
           uv pip install \
             meson-python \
             "cypari2 >=2.2.1" \
-            "cysignals >=1.11.2, != 1.12.0" \
-            "cython >=3.0, != 3.0.3, < 3.1.0" \
+            "cysignals >=1.12.1" \
+            "cython >=3.1.0" \
             "gmpy2 >=2.1.5" \
             memory_allocator \
             "numpy >=1.25" \

build/pkgs/configure/checksums.ini

@@ -1,3 +1,3 @@
 tarball=configure-VERSION.tar.gz
-sha1=90e591299fb8d0abd1e286d4005892f8d75b287f
-sha256=8f67f1ebb4b1342c9b401af687db3df2467a81399c11619787957892f1588dcb
+sha1=15f24975477f68d9d018d7773b85a1a1e9ef8889
+sha256=4e60701ef332229d04ca9254c340bfee70ad313f3a9fc01bf136cbb45ceda66e

build/pkgs/configure/package-version.txt

@@ -1 +1 @@
-bd193409ca35ad695bb473d19751be0a16d9e32f
+3d5218bc716ca70a87ece1e5a9f00e5daefe9bac

pyproject.toml

@@ -5,9 +5,8 @@ requires = [
   'cypari2 >=2.2.1; sys_platform != "win32"',
   'meson-python',
   # Exclude 1.12.0 because of https://github.com/sagemath/cysignals/issues/212
-  'cysignals >=1.11.2, != 1.12.0',
-  # Exclude 3.0.3 because of https://github.com/cython/cython/issues/5748
-  'cython >=3.0, != 3.0.3',
+  'cysignals >=1.12.1',
+  'cython >=3.1.0',
   'gmpy2 >=2.1.5',
   'jinja2',
   'memory_allocator',
@@ -46,8 +45,8 @@ dependencies = [
   'cypari2 >=2.2.1; sys_platform != "win32"',
   'six >=1.15.0',
   # Exclude 1.12.0 because of https://github.com/sagemath/cysignals/issues/212
-  'cysignals >=1.11.2, != 1.12.0',
-  'cython >=3.0, != 3.0.3',
+  'cysignals >=1.12.1',
+  'cython >=3.1.0',
   'fpylll >=0.5.9; sys_platform != "win32"',
   'gmpy2 >=2.1.5',
   'ipykernel >=5.2.1',