feat(analysis): create figure 1 and 3

Author: amyheather

DESCRIPTION

@@ -23,5 +23,7 @@ Imports:
     future.apply,
     simmer
 Suggests:
-    devtools
+    devtools,
+    ggplot2,
+    scales
 Config/testthat/edition: 3

outputs/figure1_asu.png

@@ -9,6 +9,38 @@
     ]
   },
   "Packages": {
+    "MASS": {
+      "Package": "MASS",
+      "Version": "7.3-60.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "grDevices",
+        "graphics",
+        "methods",
+        "stats",
+        "utils"
+      ],
+      "Hash": "2f342c46163b0b54d7b64d1f798e2c78"
+    },
+    "Matrix": {
+      "Package": "Matrix",
+      "Version": "1.7-0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "grDevices",
+        "graphics",
+        "grid",
+        "lattice",
+        "methods",
+        "stats",
+        "utils"
+      ],
+      "Hash": "1920b2f11133b12350024297d8a4ff4a"
+    },
     "R6": {
       "Package": "R6",
       "Version": "2.5.1",
@@ -19,6 +51,16 @@
       ],
       "Hash": "470851b6d5d0ac559e9d01bb352b4021"
     },
+    "RColorBrewer": {
+      "Package": "RColorBrewer",
+      "Version": "1.1-3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "45f0398006e83a5b10b72a90663d8d8c"
+    },
     "Rcpp": {
       "Package": "Rcpp",
       "Version": "1.0.14",
@@ -346,6 +388,13 @@
       ],
       "Hash": "962174cf2aeb5b9eea581522286a911f"
     },
+    "farver": {
+      "Package": "farver",
+      "Version": "2.1.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "680887028577f3fa2a81e410ed0d6e42"
+    },
     "fastmap": {
       "Package": "fastmap",
       "Version": "1.2.0",
@@ -432,6 +481,31 @@
       ],
       "Hash": "b886f9838f82444c47a9962adc5ab8e8"
     },
+    "ggplot2": {
+      "Package": "ggplot2",
+      "Version": "3.5.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "MASS",
+        "R",
+        "cli",
+        "glue",
+        "grDevices",
+        "grid",
+        "gtable",
+        "isoband",
+        "lifecycle",
+        "mgcv",
+        "rlang",
+        "scales",
+        "stats",
+        "tibble",
+        "vctrs",
+        "withr"
+      ],
+      "Hash": "7ad64861e028a777d7d67ff83231b548"
+    },
     "gh": {
       "Package": "gh",
       "Version": "1.5.0",
@@ -482,6 +556,22 @@
       ],
       "Hash": "e0b3a53876554bd45879e596cdb10a52"
     },
+    "gtable": {
+      "Package": "gtable",
+      "Version": "0.3.6",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "cli",
+        "glue",
+        "grid",
+        "lifecycle",
+        "rlang",
+        "stats"
+      ],
+      "Hash": "de949855009e2d4d0e52a844e30617ae"
+    },
     "highr": {
       "Package": "highr",
       "Version": "0.11",
@@ -567,6 +657,17 @@
       "Repository": "CRAN",
       "Hash": "6154ec2223172bce8162d4153cda21f7"
     },
+    "isoband": {
+      "Package": "isoband",
+      "Version": "0.2.7",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "grid",
+        "utils"
+      ],
+      "Hash": "0080607b4a1a7b28979aecef976d8bc2"
+    },
     "jquerylib": {
       "Package": "jquerylib",
       "Version": "0.1.4",
@@ -603,6 +704,17 @@
       ],
       "Hash": "9fcb189926d93c636dea94fbe4f44480"
     },
+    "labeling": {
+      "Package": "labeling",
+      "Version": "0.4.3",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "graphics",
+        "stats"
+      ],
+      "Hash": "b64ec208ac5bc1852b285f665d6368b3"
+    },
     "later": {
       "Package": "later",
       "Version": "1.4.2",
@@ -614,6 +726,21 @@
       ],
       "Hash": "9591aabef9cf988f05bde9324fd3ad99"
     },
+    "lattice": {
+      "Package": "lattice",
+      "Version": "0.22-6",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "grDevices",
+        "graphics",
+        "grid",
+        "stats",
+        "utils"
+      ],
+      "Hash": "cc5ac1ba4c238c7ca9fa6a87ca11a7e2"
+    },
     "lifecycle": {
       "Package": "lifecycle",
       "Version": "1.0.4",
@@ -658,6 +785,23 @@
       ],
       "Hash": "e2817ccf4a065c5d9d7f2cfbe7c1d78c"
     },
+    "mgcv": {
+      "Package": "mgcv",
+      "Version": "1.9-1",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "Matrix",
+        "R",
+        "graphics",
+        "methods",
+        "nlme",
+        "splines",
+        "stats",
+        "utils"
+      ],
+      "Hash": "110ee9d83b496279960e162ac97764ce"
+    },
     "mime": {
       "Package": "mime",
       "Version": "0.13",
@@ -680,6 +824,20 @@
       ],
       "Hash": "96b7fedb0964cc6b86631fb2fee23afa"
     },
+    "nlme": {
+      "Package": "nlme",
+      "Version": "3.1-164",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "graphics",
+        "lattice",
+        "stats",
+        "utils"
+      ],
+      "Hash": "a623a2239e642806158bc4dc3f51565d"
+    },
     "openssl": {
       "Package": "openssl",
       "Version": "2.3.3",
@@ -1049,6 +1207,25 @@
       ],
       "Hash": "3fb78d066fb92299b1d13f6a7c9a90a8"
     },
+    "scales": {
+      "Package": "scales",
+      "Version": "1.4.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R",
+        "R6",
+        "RColorBrewer",
+        "cli",
+        "farver",
+        "glue",
+        "labeling",
+        "lifecycle",
+        "rlang",
+        "viridisLite"
+      ],
+      "Hash": "c5bba8f0d1df8c4b9538a40570798d9b"
+    },
     "sessioninfo": {
       "Package": "sessioninfo",
       "Version": "1.2.3",
@@ -1333,6 +1510,16 @@
       ],
       "Hash": "c03fa420630029418f7e6da3667aac4a"
     },
+    "viridisLite": {
+      "Package": "viridisLite",
+      "Version": "0.4.2",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Requirements": [
+        "R"
+      ],
+      "Hash": "c826c7c4241b6fc89ff55aaea3fa7491"
+    },
     "waldo": {
       "Package": "waldo",
       "Version": "0.6.1",