move modules into pyro2 to allow for packaging (#115)

Co-authored-by: Eric Johnson <yut23@users.noreply.github.com>
Co-authored-by: yut23 <yut23@gvljohnsons.com>

Author: zingale

.github/workflows/flake8.yml

@@ -41,4 +41,4 @@ jobs:
         run: python setup.py install --user
 
       - name: Run flake8
-        run: flake8 .
+        run: flake8 pyro

.github/workflows/isort.yml

@@ -41,5 +41,5 @@ jobs:
         run: python setup.py install --user
 
       - name: Validate
-        run: isort -c .
+        run: isort -c pyro
 

.github/workflows/pylint.yml

@@ -41,5 +41,5 @@ jobs:
         run: python setup.py install --user
 
       - name: Validate
-        run: pylint --errors-only pyro.py ./advection ./advection_fv4 ./advection_nonuniform ./advection_rk ./advection_weno ./analysis ./compressible ./compressible_fv4 ./compressible_react ./compressible_rk ./compressible_sdc ./compressible_sr ./diffusion ./incompressible ./lm_atm ./mesh ./multigrid ./particles ./swe ./util
+        run: pylint --errors-only pyro pyro/analysis
 

.github/workflows/pytest.yml

@@ -44,4 +44,4 @@ jobs:
         run: python setup.py install --user
 
       - name: Run tests with pytest
-        run: PYTHONPATH=$GITHUB_WORKSPACE pytest -v --cov=. --cov-config .coveragerc --nbval --ignore=docs --ignore=./multigrid/variable_coeff_elliptic.ipynb --ignore=examples/mesh --ignore=examples/multigrid --ignore=presentations
+        run: pytest -v --cov=. --cov-config .coveragerc --nbval --ignore=docs --ignore=./pyro/multigrid/variable_coeff_elliptic.ipynb --ignore=examples/mesh --ignore=examples/multigrid --ignore=presentations

.github/workflows/regtest.yml

@@ -44,5 +44,7 @@ jobs:
         run: python setup.py install --user
 
       - name: Run tests via test.py
-        run: PYTHONPATH=$GITHUB_WORKSPACE ./test.py
+        run: |
+          cd pyro
+          ./test.py
 

.gitignore

@@ -19,4 +19,9 @@ inputs.auto
 
 .pytest_cache/
 
-__pycache__/
+__pycache__/
+
+
+pyro/_version.py
+pyro.egg-info/
+.eggs/