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Merged
aseyboldt merged 5 commits into from
May 14, 2025
Merged

feat: improvements to normalizing flow #196

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9c9efe6
feat: improvements to normalizing flow
aseyboldt Apr 1, 2025
27e8013
chore: add entries to gitignore
aseyboldt May 6, 2025
2447532
feat: experiment with planar flows
aseyboldt Apr 17, 2025
f735356
build: increase optimization level
aseyboldt May 6, 2025
14296db
test: check that normalizing flows are reproducible
aseyboldt May 9, 2025
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2 changes: 2 additions & 0 deletions .gitattributes
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@@ -0,0 +1,2 @@
# SCM syntax highlighting
pixi.lock linguist-language=YAML linguist-generated=true
24 changes: 12 additions & 12 deletions .github/workflows/ci.yml
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Expand Up @@ -56,13 +56,13 @@ jobs:
python3 -m venv .venv
source .venv/bin/activate
uv pip install 'nutpie[stan]' --find-links dist --force-reinstall
uv pip install pytest pytest-timeout
pytest -m "stan and not flow"
uv pip install pytest pytest-timeout pytest-arraydiff
pytest -m "stan and not flow" --arraydiff
uv pip install 'nutpie[pymc]' --find-links dist --force-reinstall
uv pip install jax
pytest -m "pymc and not flow"
pytest -m "pymc and not flow" --arraydiff
uv pip install 'nutpie[all]' --find-links dist --force-reinstall
pytest -m flow
pytest -m flow --arraydiff

# pyarrow doesn't currently seem to work on musllinux
#musllinux:
Expand Down Expand Up @@ -183,13 +183,13 @@ jobs:
python3 -m venv .venv
source .venv/Scripts/activate
uv pip install "nutpie[stan]" --find-links dist --force-reinstall
uv pip install pytest pytest-timeout
pytest -m "stan and not flow"
uv pip install pytest pytest-timeout pytest-arraydiff
pytest -m "stan and not flow" --arraydiff
uv pip install "nutpie[pymc]" --find-links dist --force-reinstall
uv pip install jax
pytest -m "pymc and not flow"
pytest -m "pymc and not flow" --arraydiff
uv pip install "nutpie[all]" --find-links dist --force-reinstall
pytest -m flow
pytest -m flow --arraydiff

macos:
runs-on: ${{ matrix.platform.runner }}
Expand Down Expand Up @@ -232,13 +232,13 @@ jobs:
python3 -m venv .venv
source .venv/bin/activate
uv pip install 'nutpie[stan]' --find-links dist --force-reinstall
uv pip install pytest pytest-timeout
pytest -m "stan and not flow"
uv pip install pytest pytest-timeout pytest-arraydiff
pytest -m "stan and not flow" --arraydiff
uv pip install 'nutpie[pymc]' --find-links dist --force-reinstall
uv pip install jax
pytest -m "pymc and not flow"
pytest -m "pymc and not flow" --arraydiff
uv pip install 'nutpie[all]' --find-links dist --force-reinstall
pytest -m flow
pytest -m flow --arraydiff
sdist:
runs-on: ubuntu-latest
steps:
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8 changes: 8 additions & 0 deletions .gitignore
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Expand Up @@ -25,3 +25,11 @@ example-iree
posteriordb
.quarto
docs/.quarto
Untitled*
notebooks-local
pixi.lock
pixi.toml
reports
benchmarks*
reports*
results*
8 changes: 4 additions & 4 deletions Cargo.lock
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Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

4 changes: 2 additions & 2 deletions Cargo.toml
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Expand Up @@ -38,7 +38,7 @@ smallvec = "1.14.0"
upon = { version = "0.9.0", default-features = false, features = [] }
time-humanize = { version = "0.1.3", default-features = false }
indicatif = "0.17.8"
tch = { version = "0.19.0", optional = true }
tch = { version = "0.20.0", optional = true }

[dependencies.pyo3]
version = "0.24.1"
Expand All @@ -50,7 +50,7 @@ criterion = "0.5.1"
[profile.release]
lto = "fat"
codegen-units = 1
opt-level = 2
opt-level = 3

[profile.bench]
debug = true
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1 change: 1 addition & 0 deletions docs/.gitignore
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@@ -0,0 +1 @@
/.quarto/
3 changes: 2 additions & 1 deletion pyproject.toml
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Expand Up @@ -7,7 +7,7 @@ name = "nutpie"
description = "Sample Stan or PyMC models"
authors = [{ name = "PyMC Developers", email = "pymc.devs@gmail.com" }]
readme = "README.md"
requires-python = ">=3.10,<3.14"
requires-python = ">=3.10"
license = { text = "MIT" }
classifiers = [
"Programming Language :: Rust",
Expand Down Expand Up @@ -41,6 +41,7 @@ dev = [
"flowjax >= 17.0.2",
"pytest",
"pytest-timeout",
"pytest-arraydiff",
]
all = [
"bridgestan >= 2.6.1",
Expand Down
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