Migrate doc notes to blocks (#249)

Author: fsimonis

elastic-tube-1d/README.md

@@ -5,7 +5,9 @@ keywords: OpenFOAM, python
 summary: The 1D Elastic Tube is a FSI case, that consists of an internal flow in a flexible tube. The flow is unsteady and incompressible. This tutorial contains C++ and Python variants of the fluid and solid solvers. Running the simulation takes just 1-2 minutes.  
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/elastic-tube-1d). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/elastic-tube-1d). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Setup
 
@@ -90,7 +92,9 @@ cd solid-python
 
 **Optional:** A run-time plot visualization can be trigged by passing `--enable-plot` in `run.sh` of `FluidSolver.py`. Additionally a video of the run-time plot visualization can be generated by additionally passing `--write-video`
 
-{% include warning.html content= "The C++ and Python solvers lead to different results. Please consider the Python results as the correct ones and refer to this [open issue](https://github.com/precice/tutorials/issues/195) for more insight. Contributions are particularly welcome here." %}
+{% warning %}
+The C++ and Python solvers lead to different results. Please consider the Python results as the correct ones and refer to this [open issue](https://github.com/precice/tutorials/issues/195) for more insight. Contributions are particularly welcome here.
+{% endwarning %}
 
 ## Post-processing
 

elastic-tube-3d/README.md

@@ -5,7 +5,9 @@ keywords: FSI, OpenFOAM, CalculiX, nearest-projection, IMVJ
 summary: Tutorial for an FSI simulation of a three-dimensional expanding tube scenario
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/elastic-tube-3d). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/elastic-tube-3d). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Setup
 
@@ -33,4 +35,6 @@ You can visualize the results using paraView or `cgx`(for native CalculiX resul
 
 ![result tube](images/tutorials-elastic-tube-3d-tube-result.png)
 
-{% include disclaimer.html content="This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks." %}
+{% disclaimer %}
+This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks.
+{% enddisclaimer %}

flow-over-heated-plate-nearest-projection/README.md

@@ -5,7 +5,9 @@ keywords: OpenFOAM, nearest-projection, CHT
 summary: This tutorial introduces an example simulation setup for a nearest-projection mapping, based on the "flow over a heated plate" scenario.
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/flow-over-heated-plate-nearest-projection). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/flow-over-heated-plate-nearest-projection). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Setup
 
@@ -74,4 +76,6 @@ Visualizing these files (e.g. using ParaView) will show a triangular mesh, even
 
 Connectivity is defined on meshes associated with mesh nodes, which are named respectively e.g. `Fluid-Mesh-Nodes`. In this case, you could directly see the interface without applying filters by loading the `.vtk` files. In order to visualize additionally center based meshes, where no connectivity is provided, select a Glyph filter in ParaView. Furthermore, it makes a difference, on which participant the `<export...` tag is defined in your `precice-config.xml` file. Each participant exports interface meshes, which he provides or receives. The receiving participant filters out mesh parts that it does not need (for the mapping). Hence, a received mesh might look incomplete.
 
-{% include disclaimer.html content="This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks." %}
+{% disclaimer %}
+This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks.
+{% enddisclaimer %}

flow-over-heated-plate-steady-state/README.md

@@ -5,13 +5,17 @@ keywords: CHT, steady-state, Code_Aster, OpenFOAM
 summary: Using a steady-state OpenFOAM solver for a CHT coupling with code_aster. This tutorial is based on the "flow over a heated plate" scenario.
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/flow-over-heated-plate-steady-state). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/flow-over-heated-plate-steady-state). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Setup
 
 The setup for this tutorial is similar to the [flow over a heated plate](https://www.precice.org/tutorials-flow-over-heated-plate.html) using OpenFOAM. In this tutorial OpenFOAM is used as the solver for the fluid domain, and code_aster is the solver for the solid domain. A difference here is that we are using a steady-state OpenFOAM solver for demonstration purposes, therefore the results between the two tutorials are not comparable.
 
-{% include note.html content="This is a pseudo-2D case, but we still set a 3D `solver-interface` in `precice-config.xml`, because the code_aster case is set up like this at the moment. Contributions here are particularly welcome!" %}
+{% note %}
+This is a pseudo-2D case, but we still set a 3D `solver-interface` in `precice-config.xml`, because the code_aster case is set up like this at the moment. Contributions here are particularly welcome!
+{% endnote %}
 
 ## Available solvers
 
@@ -41,4 +45,6 @@ The `.rmed` file output from Code_Aster can be viewed using [GMSH](https://gmsh.
 
 ![code-aster-result](images/tutorials-flow-over-heated-plate-steady-state-result.png)
 
-{% include disclaimer.html content="This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks." %}
+{% disclaimer %}
+This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks.
+{% enddisclaimer %}

flow-over-heated-plate/README.md

@@ -5,7 +5,9 @@ keywords: tutorial, CHT, conjugate-heat transfer, OpenFOAM, FEniCS, Nutils
 summary: This tutorial describes how to run a conjugate heat transfer coupled simulation using preCICE and any fluid-solid solver combination of our <a href="adapters-overview.html">officially provided adapter codes</a>.
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/flow-over-heated-plate). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/flow-over-heated-plate). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Setup
 
@@ -87,4 +89,6 @@ After that running a case from this tutorial will export data into `solid-*/preC
 
 [1]  M. Vynnycky, S. Kimura, K. Kanev, and I. Pop. Forced convection heat transfer from a flat plate: the conjugate problem. International Journal of Heat and Mass Transfer, 41(1):45 – 59, 1998.
 
-{% include disclaimer.html content="This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks." %}
+{% disclaimer %}
+This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks.
+{% enddisclaimer %}

heat-exchanger/README.md

@@ -5,7 +5,9 @@ keywords: CHT, OpenFOAM, CalculiX
 summary: Tutorial for a shell-and-tube heat exchanger, using OpenFOAM and CalculiX
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/heat-exchanger). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/heat-exchanger). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 This tutorial describes how to run a conjugate heat transfer simulation with two separate OpenFOAM solvers and CalculiX. The files for this tutorial are located in this repository (directory CHT/heat_exchanger).
 
@@ -29,7 +31,9 @@ We define the participants `Inner-Fluid`, `Solid`, and `Outer-Fluid` and two int
 
 ## Running the Simulation
 
-{% include note.html content="Since the already prepared case contains mesh files of approx. 50MB in size, we currently host these files outside of the tutorials repository and you can download and extract them automatically in the appropriate locations by running the download-meshes.sh script. You can [help us improve this](https://github.com/precice/tutorials/issues/6)!" %}
+{% note %}
+Since the already prepared case contains mesh files of approx. 50MB in size, we currently host these files outside of the tutorials repository and you can download and extract them automatically in the appropriate locations by running the download-meshes.sh script. You can [help us improve this](https://github.com/precice/tutorials/issues/6)!
+{% endnote %}
 
 Before starting the simulation for the first time you need to download the mesh files and copy them into the appropriate location. The shell script `./download-meshes.sh` will handle these things automatically. Afterwards, the simulation setup is ready to run.
 
@@ -45,4 +49,6 @@ Unfortunately, ParaView does not support CalculiX result files. You may see the
 
 ![The heat exchanger with streamlines](images/tutorials-heat-exchanger-visualization.png)
 
-{% include disclaimer.html content="This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks." %}
+{% disclaimer %}
+This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks.
+{% enddisclaimer %}

multiple-perpendicular-flaps/README.md

@@ -5,7 +5,9 @@ keywords: multi-coupling, OpenFOAM, deal.II, FSI
 summary: In this case, a fluid and two solids are coupled together using a fully-implicit multi-coupling scheme.
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/multiple-perpendicular-flaps). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/multiple-perpendicular-flaps). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Case Setup
 
@@ -114,4 +116,6 @@ After the simulation has finished, you can visualize your results using e.g. Par
 <!-- markdownlint-configure-file {"MD034": false } -->
 [1] H. Bungartz, F. Linder, M. Mehl, B. Uekermann. A plug-and-play coupling approach for parallel multi-field simulations. _Comput Mech_ **55**, 1119-1129 (2015). https://doi.org/10.1007/s00466-014-1113-2
 
-{% include disclaimer.html content="This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks." %}
+{% disclaimer %}
+This offering is not approved or endorsed by OpenCFD Limited, producer and distributor of the OpenFOAM software via www.openfoam.com, and owner of the OPENFOAM®  and OpenCFD®  trade marks.
+{% enddisclaimer %}

partitioned-elastic-beam/README.md

@@ -5,7 +5,9 @@ keywords: Structure-Structure Coupling, CalculiX, solid mechanics
 summary: This tutorial describes how to run a structure-structure interaction simulation with CalculiX running on both sides.
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/partitioned-elastic-beam). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/partitioned-elastic-beam). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Setup
 

partitioned-heat-conduction-complex/README.md

@@ -5,7 +5,9 @@ keywords: FEniCS, Heat conduction
 summary: This tutorial is the advanced version of the "partitioned heat conduction" tutorial, showcasing more advanced features and geometries.
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/partitioned-heat-conduction-complex). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/partitioned-heat-conduction-complex). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Setup
 

partitioned-heat-conduction/README.md

@@ -5,7 +5,9 @@ keywords: FEniCS, Nutils, Heat conduction
 summary: We solve a simple heat equation. The domain is partitioned and the coupling is established in a Dirichlet-Neumann fashion.
 ---
 
-{% include note.html content="Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/partitioned-heat-conduction). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html)." %}
+{% note %}
+Get the [case files of this tutorial](https://github.com/precice/tutorials/tree/master/partitioned-heat-conduction). Read how in the [tutorials introduction](https://www.precice.org/tutorials.html).
+{% endnote %}
 
 ## Setup