diff --git a/.github/workflows/build-and-test.yml b/.github/workflows/build-and-test.yml
index 79581bcd52a23..e796950348394 100644
--- a/.github/workflows/build-and-test.yml
+++ b/.github/workflows/build-and-test.yml
@@ -73,7 +73,7 @@ jobs:
         disable-metrics: true
       if: runner.os != 'Windows'
     - name: Run unit tests in a minimal environment
-      run: env -i "$(which flox)" activate -- ./gradlew --scan test jacocoTestReport
+      run: ./flox/run_isolated.sh minimal ./gradlew --scan test jacocoTestReport
       if: runner.os != 'Windows'
     - name: Run unit tests
       run: ./gradlew --scan test jacocoTestReport
@@ -101,7 +101,7 @@ jobs:
       with:
         disable-metrics: true
     - name: Run functional tests that do not require external tools
-      run: env -i "$(which flox)" activate -- ./gradlew --scan -Dkotest.tags=!RequiresExternalTool funTest jacocoFunTestReport
+      run: ./flox/run_isolated.sh minimal ./gradlew --scan -Dkotest.tags=!RequiresExternalTool funTest jacocoFunTestReport
     - name: Create Test Summary
       uses: test-summary/action@31493c76ec9e7aa675f1585d3ed6f1da69269a86 # v2
       with:
diff --git a/REUSE.toml b/REUSE.toml
index 186bbf03817ad..f15aa454c6325 100644
--- a/REUSE.toml
+++ b/REUSE.toml
@@ -10,6 +10,11 @@ path = ".**"
 SPDX-FileCopyrightText = "2017 The ORT Project Authors (see <https://github.com/oss-review-toolkit/ort/blob/main/NOTICE>)"
 SPDX-License-Identifier = "Apache-2.0"
 
+[[annotations]]
+path = "**/.flox/**"
+SPDX-FileCopyrightText = "2025 The ORT Project Authors (see <https://github.com/oss-review-toolkit/ort/blob/main/NOTICE>)"
+SPDX-License-Identifier = "Apache-2.0"
+
 [[annotations]]
 path = "**/.gitattributes"
 SPDX-FileCopyrightText = "2018 The ORT Project Authors (see <https://github.com/oss-review-toolkit/ort/blob/main/NOTICE>)"
diff --git a/.flox/.gitattributes b/flox/external-tools/.flox/.gitattributes
similarity index 100%
rename from .flox/.gitattributes
rename to flox/external-tools/.flox/.gitattributes
diff --git a/.flox/.gitignore b/flox/external-tools/.flox/.gitignore
similarity index 100%
rename from .flox/.gitignore
rename to flox/external-tools/.flox/.gitignore
diff --git a/flox/external-tools/.flox/env.json b/flox/external-tools/.flox/env.json
new file mode 100644
index 0000000000000..ec6686e1fc9d2
--- /dev/null
+++ b/flox/external-tools/.flox/env.json
@@ -0,0 +1,4 @@
+{
+  "name": "external-tools",
+  "version": 1
+}
diff --git a/flox/external-tools/.flox/env/manifest.lock b/flox/external-tools/.flox/env/manifest.lock
new file mode 100644
index 0000000000000..ed1426826241b
--- /dev/null
+++ b/flox/external-tools/.flox/env/manifest.lock
@@ -0,0 +1,431 @@
+{
+  "lockfile-version": 1,
+  "manifest": {
+    "version": 1,
+    "install": {
+      "askalono": {
+        "pkg-path": "askalono",
+        "version": "0.5.0"
+      },
+      "coreutils": {
+        "pkg-path": "coreutils"
+      },
+      "findutils": {
+        "pkg-path": "findutils"
+      },
+      "gnused": {
+        "pkg-path": "gnused"
+      },
+      "jdk21": {
+        "pkg-path": "jdk21"
+      },
+      "licensee": {
+        "pkg-path": "licensee",
+        "version": "9.18.0"
+      },
+      "scancode": {
+        "pkg-path": "python313Packages.scancode-toolkit",
+        "version": "32.4.1"
+      }
+    },
+    "vars": {
+      "FLOX_DISABLE_METRICS": "true"
+    },
+    "options": {
+      "systems": [
+        "x86_64-linux"
+      ],
+      "cuda-detection": false,
+      "activate": {
+        "mode": "run"
+      }
+    }
+  },
+  "packages": [
+    {
+      "attr_path": "askalono",
+      "broken": false,
+      "derivation": "/nix/store/cs0r6zbl6bi3vxn649kd88cinv423p17-askalono-0.5.0.drv",
+      "description": "Tool to detect open source licenses from texts",
+      "install_id": "askalono",
+      "license": "Apache-2.0",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "askalono-0.5.0",
+      "pname": "askalono",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:21:45.089339Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "0.5.0",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "out": "/nix/store/29qdm571l1avbarlwgqmqcg8smj3cnaj-askalono-0.5.0"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    },
+    {
+      "attr_path": "coreutils",
+      "broken": false,
+      "derivation": "/nix/store/m507z3g5zq4lv5x99rqb6dfdh5m0xixx-coreutils-9.8.drv",
+      "description": "GNU Core Utilities",
+      "install_id": "coreutils",
+      "license": "GPL-3.0-or-later",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "coreutils-9.8",
+      "pname": "coreutils",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:21:45.670192Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "9.8",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "debug": "/nix/store/94960sngigrxkp9c4xf1w5kkp99fn41j-coreutils-9.8-debug",
+        "info": "/nix/store/y1m7chay8is0jhibk9n4a39sacbnsf8q-coreutils-9.8-info",
+        "out": "/nix/store/imad8dvhp77h0pjbckp6wvmnyhp8dpgg-coreutils-9.8"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    },
+    {
+      "attr_path": "findutils",
+      "broken": false,
+      "derivation": "/nix/store/3shvx0chqk6wsazrwqv401apv1p7cbmy-findutils-4.10.0.drv",
+      "description": "GNU Find Utilities, the basic directory searching utilities of the GNU operating system",
+      "install_id": "findutils",
+      "license": "GPL-3.0-or-later",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "findutils-4.10.0",
+      "pname": "findutils",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:21:46.432840Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "4.10.0",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "info": "/nix/store/a9zjkxa2lhxfczxh7rbv1gg92ssinpq2-findutils-4.10.0-info",
+        "locate": "/nix/store/w6wisplhj1i8s7msj7qnn5xi5m02izgs-findutils-4.10.0-locate",
+        "out": "/nix/store/av4xw9f56xlx5pgv862wabfif6m1yc0a-findutils-4.10.0"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    },
+    {
+      "attr_path": "gnused",
+      "broken": false,
+      "derivation": "/nix/store/379i0mbr9krm4pp924s43k1mxgpjy36d-gnused-4.9.drv",
+      "description": "GNU sed, a batch stream editor",
+      "install_id": "gnused",
+      "license": "GPL-3.0-or-later",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "gnused-4.9",
+      "pname": "gnused",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:21:47.437825Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "4.9",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "info": "/nix/store/p0xbl3agrrybwbqykdsh18yw1vf5n0p8-gnused-4.9-info",
+        "out": "/nix/store/drc7kang929jaza6cy9zdx10s4gw1z5p-gnused-4.9"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    },
+    {
+      "attr_path": "jdk21",
+      "broken": false,
+      "derivation": "/nix/store/b7j35wva9ag6zzsvd1g4hvy1zmvv4pwv-openjdk-21.0.9+10.drv",
+      "description": "Open-source Java Development Kit",
+      "install_id": "jdk21",
+      "license": "GPL-2.0-only",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "openjdk-21.0.9+10",
+      "pname": "jdk21",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:22:06.781716Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "21.0.9+10",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "debug": "/nix/store/iqrpym2396ppr5498xci88zf6kc37yxl-openjdk-21.0.9+10-debug",
+        "out": "/nix/store/65qpdkc33j5wqzxvz8c23zhgms8hl35y-openjdk-21.0.9+10"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    },
+    {
+      "attr_path": "licensee",
+      "broken": false,
+      "derivation": "/nix/store/8dz9kax6nrxfs9ih5flvqa3rzn6z4m3g-licensee-9.18.0.drv",
+      "description": "Ruby Gem to detect under what license a project is distributed",
+      "install_id": "licensee",
+      "license": "MIT",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "licensee-9.18.0",
+      "pname": "licensee",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:22:11.287396Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "9.18.0",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "out": "/nix/store/0vvfcirkcb60fgdb5262ql2kh8s27i9z-licensee-9.18.0"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    },
+    {
+      "attr_path": "python313Packages.scancode-toolkit",
+      "broken": false,
+      "derivation": "/nix/store/4cdwapmmmbdsn4df6052hfv8dgl21rli-python3.13-scancode-toolkit-32.4.1.drv",
+      "description": "Tool to scan code for license, copyright, package and their documented dependencies and other interesting facts",
+      "install_id": "scancode",
+      "license": "[ Apache-2.0, CC-BY-4.0 ]",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "python3.13-scancode-toolkit-32.4.1",
+      "pname": "scancode-toolkit",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:23:32.725926Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "32.4.1",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "dist": "/nix/store/r1adpf44r11x5mmajphffvwmck0fbpxw-python3.13-scancode-toolkit-32.4.1-dist",
+        "out": "/nix/store/qlxbfh5mc5i047xi0qmn4zycnqpwis9n-python3.13-scancode-toolkit-32.4.1"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    }
+  ],
+  "compose": {
+    "composer": {
+      "version": 1,
+      "vars": {
+        "FLOX_DISABLE_METRICS": "true"
+      },
+      "options": {
+        "systems": [
+          "x86_64-linux"
+        ],
+        "cuda-detection": false,
+        "activate": {
+          "mode": "run"
+        }
+      },
+      "include": {
+        "environments": [
+          {
+            "dir": "../minimal"
+          },
+          {
+            "dir": "../../plugins/scanners"
+          }
+        ]
+      }
+    },
+    "include": [
+      {
+        "manifest": {
+          "version": 1,
+          "install": {
+            "coreutils": {
+              "pkg-path": "coreutils"
+            },
+            "findutils": {
+              "pkg-path": "findutils"
+            },
+            "gnused": {
+              "pkg-path": "gnused"
+            },
+            "jdk21": {
+              "pkg-path": "jdk21"
+            }
+          },
+          "vars": {
+            "FLOX_DISABLE_METRICS": "true"
+          },
+          "options": {
+            "systems": [
+              "x86_64-linux"
+            ],
+            "cuda-detection": false,
+            "activate": {
+              "mode": "run"
+            }
+          }
+        },
+        "name": "ort-flox",
+        "descriptor": {
+          "dir": "../minimal"
+        }
+      },
+      {
+        "manifest": {
+          "version": 1,
+          "install": {
+            "askalono": {
+              "pkg-path": "askalono",
+              "version": "0.5.0"
+            },
+            "licensee": {
+              "pkg-path": "licensee",
+              "version": "9.18.0"
+            },
+            "scancode": {
+              "pkg-path": "python313Packages.scancode-toolkit",
+              "version": "32.4.1"
+            }
+          },
+          "vars": {
+            "FLOX_DISABLE_METRICS": "true"
+          },
+          "options": {
+            "systems": [
+              "x86_64-linux"
+            ],
+            "cuda-detection": false,
+            "activate": {
+              "mode": "run"
+            }
+          }
+        },
+        "name": "scanners",
+        "descriptor": {
+          "dir": "../../plugins/scanners"
+        }
+      }
+    ],
+    "warnings": [
+      {
+        "warning": {
+          "Overriding": [
+            "vars",
+            "FLOX_DISABLE_METRICS"
+          ]
+        },
+        "higher_priority_name": "scanners"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "activate",
+            "mode"
+          ]
+        },
+        "higher_priority_name": "scanners"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "cuda-detection"
+          ]
+        },
+        "higher_priority_name": "scanners"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "systems"
+          ]
+        },
+        "higher_priority_name": "scanners"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "vars",
+            "FLOX_DISABLE_METRICS"
+          ]
+        },
+        "higher_priority_name": "Current manifest"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "activate",
+            "mode"
+          ]
+        },
+        "higher_priority_name": "Current manifest"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "cuda-detection"
+          ]
+        },
+        "higher_priority_name": "Current manifest"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "systems"
+          ]
+        },
+        "higher_priority_name": "Current manifest"
+      }
+    ]
+  }
+}
diff --git a/flox/external-tools/.flox/env/manifest.toml b/flox/external-tools/.flox/env/manifest.toml
new file mode 100644
index 0000000000000..5fd45bb0a66d8
--- /dev/null
+++ b/flox/external-tools/.flox/env/manifest.toml
@@ -0,0 +1,16 @@
+# Flox manifest version managed by Flox CLI
+version = 1
+
+[vars]
+FLOX_DISABLE_METRICS = "true"
+
+[options]
+activate.mode = "run"
+cuda-detection = false
+systems = ["x86_64-linux"]
+
+[include]
+environments = [
+  { dir = "../minimal" },
+  { dir = "../../plugins/scanners" }
+]
diff --git a/flox/minimal/.flox/.gitattributes b/flox/minimal/.flox/.gitattributes
new file mode 100644
index 0000000000000..bb5491e192330
--- /dev/null
+++ b/flox/minimal/.flox/.gitattributes
@@ -0,0 +1 @@
+env/manifest.lock linguist-generated=true linguist-language=JSON
diff --git a/flox/minimal/.flox/.gitignore b/flox/minimal/.flox/.gitignore
new file mode 100644
index 0000000000000..8d211868311bd
--- /dev/null
+++ b/flox/minimal/.flox/.gitignore
@@ -0,0 +1,5 @@
+run/
+cache/
+lib/
+log/
+!env/
diff --git a/.flox/env.json b/flox/minimal/.flox/env.json
similarity index 100%
rename from .flox/env.json
rename to flox/minimal/.flox/env.json
diff --git a/.flox/env/manifest.lock b/flox/minimal/.flox/env/manifest.lock
similarity index 100%
rename from .flox/env/manifest.lock
rename to flox/minimal/.flox/env/manifest.lock
diff --git a/.flox/env/manifest.toml b/flox/minimal/.flox/env/manifest.toml
similarity index 100%
rename from .flox/env/manifest.toml
rename to flox/minimal/.flox/env/manifest.toml
diff --git a/flox/run_isolated.sh b/flox/run_isolated.sh
new file mode 100755
index 0000000000000..982965060738f
--- /dev/null
+++ b/flox/run_isolated.sh
@@ -0,0 +1,30 @@
+#!/usr/bin/env bash
+
+# Copyright (C) 2025 The ORT Project Authors (see <https://github.com/oss-review-toolkit/ort/blob/main/NOTICE>)
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     https://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+# SPDX-License-Identifier: Apache-2.0
+# License-Filename: LICENSE
+
+SELF="${BASH_SOURCE[0]}"
+
+if [ "$#" -lt 2 ]; then
+    echo "Usage: $SELF <environment directory> <command to run>" >&2
+    exit 1
+fi
+
+ENV_DIR="$(dirname "$SELF")/$1"
+shift
+
+env -i "$(which flox)" activate -d "$ENV_DIR" -- "$@"
diff --git a/plugins/scanners/.flox/.gitattributes b/plugins/scanners/.flox/.gitattributes
new file mode 100644
index 0000000000000..bb5491e192330
--- /dev/null
+++ b/plugins/scanners/.flox/.gitattributes
@@ -0,0 +1 @@
+env/manifest.lock linguist-generated=true linguist-language=JSON
diff --git a/plugins/scanners/.flox/.gitignore b/plugins/scanners/.flox/.gitignore
new file mode 100644
index 0000000000000..8d211868311bd
--- /dev/null
+++ b/plugins/scanners/.flox/.gitignore
@@ -0,0 +1,5 @@
+run/
+cache/
+lib/
+log/
+!env/
diff --git a/plugins/scanners/.flox/env.json b/plugins/scanners/.flox/env.json
new file mode 100644
index 0000000000000..d1013981e62f6
--- /dev/null
+++ b/plugins/scanners/.flox/env.json
@@ -0,0 +1,4 @@
+{
+  "name": "scanners",
+  "version": 1
+}
diff --git a/plugins/scanners/.flox/env/manifest.lock b/plugins/scanners/.flox/env/manifest.lock
new file mode 100644
index 0000000000000..b08ddbee59d7d
--- /dev/null
+++ b/plugins/scanners/.flox/env/manifest.lock
@@ -0,0 +1,348 @@
+{
+  "lockfile-version": 1,
+  "manifest": {
+    "version": 1,
+    "install": {
+      "askalono": {
+        "pkg-path": "askalono",
+        "version": "0.5.0"
+      },
+      "licensee": {
+        "pkg-path": "licensee",
+        "version": "9.18.0"
+      },
+      "scancode": {
+        "pkg-path": "python313Packages.scancode-toolkit",
+        "version": "32.4.1"
+      }
+    },
+    "vars": {
+      "FLOX_DISABLE_METRICS": "true"
+    },
+    "options": {
+      "systems": [
+        "x86_64-linux"
+      ],
+      "cuda-detection": false,
+      "activate": {
+        "mode": "run"
+      }
+    }
+  },
+  "packages": [
+    {
+      "attr_path": "askalono",
+      "broken": false,
+      "derivation": "/nix/store/cs0r6zbl6bi3vxn649kd88cinv423p17-askalono-0.5.0.drv",
+      "description": "Tool to detect open source licenses from texts",
+      "install_id": "askalono",
+      "license": "Apache-2.0",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "askalono-0.5.0",
+      "pname": "askalono",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:21:45.089339Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "0.5.0",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "out": "/nix/store/29qdm571l1avbarlwgqmqcg8smj3cnaj-askalono-0.5.0"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    },
+    {
+      "attr_path": "licensee",
+      "broken": false,
+      "derivation": "/nix/store/8dz9kax6nrxfs9ih5flvqa3rzn6z4m3g-licensee-9.18.0.drv",
+      "description": "Ruby Gem to detect under what license a project is distributed",
+      "install_id": "licensee",
+      "license": "MIT",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "licensee-9.18.0",
+      "pname": "licensee",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:22:11.287396Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "9.18.0",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "out": "/nix/store/0vvfcirkcb60fgdb5262ql2kh8s27i9z-licensee-9.18.0"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    },
+    {
+      "attr_path": "python313Packages.scancode-toolkit",
+      "broken": false,
+      "derivation": "/nix/store/4cdwapmmmbdsn4df6052hfv8dgl21rli-python3.13-scancode-toolkit-32.4.1.drv",
+      "description": "Tool to scan code for license, copyright, package and their documented dependencies and other interesting facts",
+      "install_id": "scancode",
+      "license": "[ Apache-2.0, CC-BY-4.0 ]",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "python3.13-scancode-toolkit-32.4.1",
+      "pname": "scancode-toolkit",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:23:32.725926Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "32.4.1",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "dist": "/nix/store/r1adpf44r11x5mmajphffvwmck0fbpxw-python3.13-scancode-toolkit-32.4.1-dist",
+        "out": "/nix/store/qlxbfh5mc5i047xi0qmn4zycnqpwis9n-python3.13-scancode-toolkit-32.4.1"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    }
+  ],
+  "compose": {
+    "composer": {
+      "version": 1,
+      "vars": {
+        "FLOX_DISABLE_METRICS": "true"
+      },
+      "options": {
+        "systems": [
+          "x86_64-linux"
+        ],
+        "cuda-detection": false,
+        "activate": {
+          "mode": "run"
+        }
+      },
+      "include": {
+        "environments": [
+          {
+            "dir": "askalono"
+          },
+          {
+            "dir": "licensee"
+          },
+          {
+            "dir": "scancode"
+          }
+        ]
+      }
+    },
+    "include": [
+      {
+        "manifest": {
+          "version": 1,
+          "install": {
+            "askalono": {
+              "pkg-path": "askalono",
+              "version": "0.5.0"
+            }
+          },
+          "vars": {
+            "FLOX_DISABLE_METRICS": "true"
+          },
+          "options": {
+            "systems": [
+              "x86_64-linux"
+            ],
+            "cuda-detection": false,
+            "activate": {
+              "mode": "run"
+            }
+          }
+        },
+        "name": "askalono",
+        "descriptor": {
+          "dir": "askalono"
+        }
+      },
+      {
+        "manifest": {
+          "version": 1,
+          "install": {
+            "licensee": {
+              "pkg-path": "licensee",
+              "version": "9.18.0"
+            }
+          },
+          "vars": {
+            "FLOX_DISABLE_METRICS": "true"
+          },
+          "options": {
+            "systems": [
+              "x86_64-linux"
+            ],
+            "cuda-detection": false,
+            "activate": {
+              "mode": "run"
+            }
+          }
+        },
+        "name": "licensee",
+        "descriptor": {
+          "dir": "licensee"
+        }
+      },
+      {
+        "manifest": {
+          "version": 1,
+          "install": {
+            "scancode": {
+              "pkg-path": "python313Packages.scancode-toolkit",
+              "version": "32.4.1"
+            }
+          },
+          "vars": {
+            "FLOX_DISABLE_METRICS": "true"
+          },
+          "options": {
+            "systems": [
+              "x86_64-linux"
+            ],
+            "cuda-detection": false,
+            "activate": {
+              "mode": "run"
+            }
+          }
+        },
+        "name": "scancode",
+        "descriptor": {
+          "dir": "scancode"
+        }
+      }
+    ],
+    "warnings": [
+      {
+        "warning": {
+          "Overriding": [
+            "vars",
+            "FLOX_DISABLE_METRICS"
+          ]
+        },
+        "higher_priority_name": "licensee"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "activate",
+            "mode"
+          ]
+        },
+        "higher_priority_name": "licensee"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "cuda-detection"
+          ]
+        },
+        "higher_priority_name": "licensee"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "systems"
+          ]
+        },
+        "higher_priority_name": "licensee"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "vars",
+            "FLOX_DISABLE_METRICS"
+          ]
+        },
+        "higher_priority_name": "scancode"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "activate",
+            "mode"
+          ]
+        },
+        "higher_priority_name": "scancode"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "cuda-detection"
+          ]
+        },
+        "higher_priority_name": "scancode"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "systems"
+          ]
+        },
+        "higher_priority_name": "scancode"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "vars",
+            "FLOX_DISABLE_METRICS"
+          ]
+        },
+        "higher_priority_name": "Current manifest"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "activate",
+            "mode"
+          ]
+        },
+        "higher_priority_name": "Current manifest"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "cuda-detection"
+          ]
+        },
+        "higher_priority_name": "Current manifest"
+      },
+      {
+        "warning": {
+          "Overriding": [
+            "options",
+            "systems"
+          ]
+        },
+        "higher_priority_name": "Current manifest"
+      }
+    ]
+  }
+}
diff --git a/plugins/scanners/.flox/env/manifest.toml b/plugins/scanners/.flox/env/manifest.toml
new file mode 100644
index 0000000000000..a14eeddef6e51
--- /dev/null
+++ b/plugins/scanners/.flox/env/manifest.toml
@@ -0,0 +1,17 @@
+# Flox manifest version managed by Flox CLI
+version = 1
+
+[vars]
+FLOX_DISABLE_METRICS = "true"
+
+[options]
+activate.mode = "run"
+cuda-detection = false
+systems = ["x86_64-linux"]
+
+[include]
+environments = [
+  { dir = "askalono" },
+  { dir = "licensee" },
+  { dir = "scancode" }
+]
diff --git a/plugins/scanners/askalono/.flox/.gitattributes b/plugins/scanners/askalono/.flox/.gitattributes
new file mode 100644
index 0000000000000..bb5491e192330
--- /dev/null
+++ b/plugins/scanners/askalono/.flox/.gitattributes
@@ -0,0 +1 @@
+env/manifest.lock linguist-generated=true linguist-language=JSON
diff --git a/plugins/scanners/askalono/.flox/.gitignore b/plugins/scanners/askalono/.flox/.gitignore
new file mode 100644
index 0000000000000..8d211868311bd
--- /dev/null
+++ b/plugins/scanners/askalono/.flox/.gitignore
@@ -0,0 +1,5 @@
+run/
+cache/
+lib/
+log/
+!env/
diff --git a/plugins/scanners/askalono/.flox/env.json b/plugins/scanners/askalono/.flox/env.json
new file mode 100644
index 0000000000000..4950bee22db62
--- /dev/null
+++ b/plugins/scanners/askalono/.flox/env.json
@@ -0,0 +1,4 @@
+{
+  "name": "askalono",
+  "version": 1
+}
diff --git a/plugins/scanners/askalono/.flox/env/manifest.lock b/plugins/scanners/askalono/.flox/env/manifest.lock
new file mode 100644
index 0000000000000..4fb9752b20631
--- /dev/null
+++ b/plugins/scanners/askalono/.flox/env/manifest.lock
@@ -0,0 +1,55 @@
+{
+  "lockfile-version": 1,
+  "manifest": {
+    "version": 1,
+    "install": {
+      "askalono": {
+        "pkg-path": "askalono",
+        "version": "0.5.0"
+      }
+    },
+    "vars": {
+      "FLOX_DISABLE_METRICS": "true"
+    },
+    "options": {
+      "systems": [
+        "x86_64-linux"
+      ],
+      "cuda-detection": false,
+      "activate": {
+        "mode": "run"
+      }
+    }
+  },
+  "packages": [
+    {
+      "attr_path": "askalono",
+      "broken": false,
+      "derivation": "/nix/store/cs0r6zbl6bi3vxn649kd88cinv423p17-askalono-0.5.0.drv",
+      "description": "Tool to detect open source licenses from texts",
+      "install_id": "askalono",
+      "license": "Apache-2.0",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "askalono-0.5.0",
+      "pname": "askalono",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:21:45.089339Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "0.5.0",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "out": "/nix/store/29qdm571l1avbarlwgqmqcg8smj3cnaj-askalono-0.5.0"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    }
+  ]
+}
diff --git a/plugins/scanners/askalono/.flox/env/manifest.toml b/plugins/scanners/askalono/.flox/env/manifest.toml
new file mode 100644
index 0000000000000..895bc868d194f
--- /dev/null
+++ b/plugins/scanners/askalono/.flox/env/manifest.toml
@@ -0,0 +1,14 @@
+# Flox manifest version managed by Flox CLI
+version = 1
+
+[vars]
+FLOX_DISABLE_METRICS = "true"
+
+[options]
+activate.mode = "run"
+cuda-detection = false
+systems = ["x86_64-linux"]
+
+[install]
+askalono.pkg-path = "askalono"
+askalono.version = "0.5.0"
diff --git a/plugins/scanners/licensee/.flox/.gitattributes b/plugins/scanners/licensee/.flox/.gitattributes
new file mode 100644
index 0000000000000..bb5491e192330
--- /dev/null
+++ b/plugins/scanners/licensee/.flox/.gitattributes
@@ -0,0 +1 @@
+env/manifest.lock linguist-generated=true linguist-language=JSON
diff --git a/plugins/scanners/licensee/.flox/.gitignore b/plugins/scanners/licensee/.flox/.gitignore
new file mode 100644
index 0000000000000..8d211868311bd
--- /dev/null
+++ b/plugins/scanners/licensee/.flox/.gitignore
@@ -0,0 +1,5 @@
+run/
+cache/
+lib/
+log/
+!env/
diff --git a/plugins/scanners/licensee/.flox/env.json b/plugins/scanners/licensee/.flox/env.json
new file mode 100644
index 0000000000000..3cc2d098bd514
--- /dev/null
+++ b/plugins/scanners/licensee/.flox/env.json
@@ -0,0 +1,4 @@
+{
+  "name": "licensee",
+  "version": 1
+}
diff --git a/plugins/scanners/licensee/.flox/env/manifest.lock b/plugins/scanners/licensee/.flox/env/manifest.lock
new file mode 100644
index 0000000000000..85ec5f8f3881e
--- /dev/null
+++ b/plugins/scanners/licensee/.flox/env/manifest.lock
@@ -0,0 +1,55 @@
+{
+  "lockfile-version": 1,
+  "manifest": {
+    "version": 1,
+    "install": {
+      "licensee": {
+        "pkg-path": "licensee",
+        "version": "9.18.0"
+      }
+    },
+    "vars": {
+      "FLOX_DISABLE_METRICS": "true"
+    },
+    "options": {
+      "systems": [
+        "x86_64-linux"
+      ],
+      "cuda-detection": false,
+      "activate": {
+        "mode": "run"
+      }
+    }
+  },
+  "packages": [
+    {
+      "attr_path": "licensee",
+      "broken": false,
+      "derivation": "/nix/store/8dz9kax6nrxfs9ih5flvqa3rzn6z4m3g-licensee-9.18.0.drv",
+      "description": "Ruby Gem to detect under what license a project is distributed",
+      "install_id": "licensee",
+      "license": "MIT",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "licensee-9.18.0",
+      "pname": "licensee",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:22:11.287396Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "9.18.0",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "out": "/nix/store/0vvfcirkcb60fgdb5262ql2kh8s27i9z-licensee-9.18.0"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    }
+  ]
+}
diff --git a/plugins/scanners/licensee/.flox/env/manifest.toml b/plugins/scanners/licensee/.flox/env/manifest.toml
new file mode 100644
index 0000000000000..edaebbaf6596d
--- /dev/null
+++ b/plugins/scanners/licensee/.flox/env/manifest.toml
@@ -0,0 +1,14 @@
+# Flox manifest version managed by Flox CLI
+version = 1
+
+[vars]
+FLOX_DISABLE_METRICS = "true"
+
+[options]
+activate.mode = "run"
+cuda-detection = false
+systems = ["x86_64-linux"]
+
+[install]
+licensee.pkg-path = "licensee"
+licensee.version = "9.18.0"
diff --git a/plugins/scanners/scancode/.flox/.gitattributes b/plugins/scanners/scancode/.flox/.gitattributes
new file mode 100644
index 0000000000000..bb5491e192330
--- /dev/null
+++ b/plugins/scanners/scancode/.flox/.gitattributes
@@ -0,0 +1 @@
+env/manifest.lock linguist-generated=true linguist-language=JSON
diff --git a/plugins/scanners/scancode/.flox/.gitignore b/plugins/scanners/scancode/.flox/.gitignore
new file mode 100644
index 0000000000000..8d211868311bd
--- /dev/null
+++ b/plugins/scanners/scancode/.flox/.gitignore
@@ -0,0 +1,5 @@
+run/
+cache/
+lib/
+log/
+!env/
diff --git a/plugins/scanners/scancode/.flox/env.json b/plugins/scanners/scancode/.flox/env.json
new file mode 100644
index 0000000000000..6db2c8ce83ac9
--- /dev/null
+++ b/plugins/scanners/scancode/.flox/env.json
@@ -0,0 +1,4 @@
+{
+  "name": "scancode",
+  "version": 1
+}
diff --git a/plugins/scanners/scancode/.flox/env/manifest.lock b/plugins/scanners/scancode/.flox/env/manifest.lock
new file mode 100644
index 0000000000000..a52a80ac3c6e6
--- /dev/null
+++ b/plugins/scanners/scancode/.flox/env/manifest.lock
@@ -0,0 +1,56 @@
+{
+  "lockfile-version": 1,
+  "manifest": {
+    "version": 1,
+    "install": {
+      "scancode": {
+        "pkg-path": "python313Packages.scancode-toolkit",
+        "version": "32.4.1"
+      }
+    },
+    "vars": {
+      "FLOX_DISABLE_METRICS": "true"
+    },
+    "options": {
+      "systems": [
+        "x86_64-linux"
+      ],
+      "cuda-detection": false,
+      "activate": {
+        "mode": "run"
+      }
+    }
+  },
+  "packages": [
+    {
+      "attr_path": "python313Packages.scancode-toolkit",
+      "broken": false,
+      "derivation": "/nix/store/4cdwapmmmbdsn4df6052hfv8dgl21rli-python3.13-scancode-toolkit-32.4.1.drv",
+      "description": "Tool to scan code for license, copyright, package and their documented dependencies and other interesting facts",
+      "install_id": "scancode",
+      "license": "[ Apache-2.0, CC-BY-4.0 ]",
+      "locked_url": "https://github.com/flox/nixpkgs?rev=5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "name": "python3.13-scancode-toolkit-32.4.1",
+      "pname": "scancode-toolkit",
+      "rev": "5ae3b07d8d6527c42f17c876e404993199144b6a",
+      "rev_count": 901419,
+      "rev_date": "2025-11-24T06:39:56Z",
+      "scrape_date": "2025-11-26T03:23:32.725926Z",
+      "stabilities": [
+        "unstable"
+      ],
+      "unfree": false,
+      "version": "32.4.1",
+      "outputs_to_install": [
+        "out"
+      ],
+      "outputs": {
+        "dist": "/nix/store/r1adpf44r11x5mmajphffvwmck0fbpxw-python3.13-scancode-toolkit-32.4.1-dist",
+        "out": "/nix/store/qlxbfh5mc5i047xi0qmn4zycnqpwis9n-python3.13-scancode-toolkit-32.4.1"
+      },
+      "system": "x86_64-linux",
+      "group": "toplevel",
+      "priority": 5
+    }
+  ]
+}
diff --git a/plugins/scanners/scancode/.flox/env/manifest.toml b/plugins/scanners/scancode/.flox/env/manifest.toml
new file mode 100644
index 0000000000000..7eb8a9fb6556b
--- /dev/null
+++ b/plugins/scanners/scancode/.flox/env/manifest.toml
@@ -0,0 +1,14 @@
+# Flox manifest version managed by Flox CLI
+version = 1
+
+[vars]
+FLOX_DISABLE_METRICS = "true"
+
+[options]
+activate.mode = "run"
+cuda-detection = false
+systems = ["x86_64-linux"]
+
+[install]
+scancode.pkg-path = "python313Packages.scancode-toolkit"
+scancode.version = "32.4.1"