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Merge pull request #3503 from nipy/rel/1.8.4
REL: 1.8.4
2 parents 4a91e88 + e918b2d commit 71411b0

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‎.mailmap‎

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@@ -6,8 +6,8 @@ Alejandro Tabas <alextabas@gmail.com> <qtabas@gmail.com>
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Alejandro de la Vega <aleph4@gmail.com>
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Alejandro de la Vega <aleph4@gmail.com> <delavega@utexas.edu>
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Alexander Schaefer <alexschaefer83@gmail.com>
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Alexander Schaefer <alexschaefer83@gmail.com> <aschaefer@melisse.cbs.mpg.de>
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Alexander Schaefer <alexschaefer83@gmail.com> <aschaefer@aschaefer-U36SD.(none)>
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Alexander Schaefer <alexschaefer83@gmail.com> <aschaefer@melisse.cbs.mpg.de>
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Alexandre M. Savio <alexsavio@gmail.com>
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Alexandre M. Savio <alexsavio@gmail.com> <alexsavio@users.noreply.github.com>
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Andrea Dell'Orco <orco@paranoici.org>
@@ -22,9 +22,9 @@ Anna Doll <45283972+AnnaD15@users.noreply.github.com>
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Ariel Rokem <arokem@berkeley.edu>
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Ariel Rokem <arokem@berkeley.edu> <arokem@gmail.com>
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Arman Eshaghi <arman.eshaghi@gmail.com>
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Ashely Gillman <gillmanash@gmail.com> <ashley.gillman@csiro.au>
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Avneet Kaur <avneetkaur@bohr.neurobio.nru.dk>
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Avneet Kaur <avneetkaur@bohr.neurobio.nru.dk> <avneet14027@iiitd.ac.in>
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Ashely Gillman <gillmanash@gmail.com> <ashley.gillman@csiro.au>
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Basille Pinsard <basile.pinsard@umontreal.ca>
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Basille Pinsard <basile.pinsard@umontreal.ca> <bpinsard@imed.jussieu.fr>
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Ben Cipollini <bcipollini@classy.org> <bcipolli@ucsd.edu>
@@ -39,8 +39,8 @@ Blake Dewey <blake.dewey@jhu.edu> <deweybe@ndsl-nib-bdewey.ninds.nih.gov>
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Brendan Moloney <moloney.brendan@gmail.com>
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Caroline Froehlich <carol.frohlich@gmail.com>
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Christopher J. Markiewicz <effigies@gmail.com>
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Christopher J. Markiewicz <effigies@gmail.com> <markiewicz@stanford.edu>
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Christopher J. Markiewicz <effigies@gmail.com> <effigies@bu.edu>
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Christopher J. Markiewicz <effigies@gmail.com> <markiewicz@stanford.edu>
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Christopher John Steele <steelec@gmail.com>
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Cindee Madison <cindee@berkeley.edu>
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Colin Buchanan <colinrbuchanan@gmail.com>
@@ -49,8 +49,8 @@ Colin Buchanan <colinrbuchanan@gmail.com> <mankind@MacBook.local>
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Daniel Brenner <daniel.brenner@me.com>
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Daniel Clark <danieljclark87@gmail.com>
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Daniel Geisler <daniel.geisler@gmail.com>
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Daniel Geisler <daniel.geisler@gmail.com> <daniel.geisler@uniklinikum-dresden.de>
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Daniel Geisler <daniel.geisler@gmail.com> <3453485+daniel-ge@users.noreply.github.com>
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Daniel Geisler <daniel.geisler@gmail.com> <daniel.geisler@uniklinikum-dresden.de>
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Daniel Ginsburg <daniel.ginsburg@childrens.harvard.edu>
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Daniel McNamee <dmcx88@gmail.com>
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David Ellis <dgellis90@gmail.com> <david-ellis@uiowa.edu>
@@ -89,17 +89,17 @@ Hrvoje Stojic <hrvoje.stojic@protonmail.com>
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Isaac Schwabacher <ischwabacher@wisc.edu>
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Jakub Kaczmarzyk <jakubk@mit.edu>
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James Kent <james-kent@uiowa.edu>
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James Kent <james-kent@uiowa.edu> <mertzf@bargle.argle>
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James Kent <james-kent@uiowa.edu> <jamesdkent21@gmail.com>
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James Kent <james-kent@uiowa.edu> <mertzf@bargle.argle>
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Janosch Linkersdörfer <linkersdoerfer@gmail.com>
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Jason Wong <jf126dolphin@gmail.com>
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Jason Wong <jf126dolphin@gmail.com> <jasonwong73@ucla.edu>
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Jens Kleesiek <kleesiek@uni-heidelberg.de>
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Jessica Forbes <jessica-forbes@uiowa.edu>
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Jérémy Guillon <jeremy.guillon@inria.fr> <jeremy.guillon@etu.upmc.fr>
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Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <Stadler@lin-magdeburg.de>
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Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <joerg.stadler@lin-magdeburg.de>
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Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <jstadler@ilin-magdeburg.de>
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Joerg Stadler <Joerg.Stadler@lin-magdeburg.de> <Stadler@lin-magdeburg.de>
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John A. Lee <johnleenimh@gmail.com>
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John A. Lee <johnleenimh@gmail.com> <leej3@users.noreply.github.com>
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Joke Durnez <joke.durnez@gmail.com>
@@ -116,39 +116,37 @@ Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kesshijordan@iPhone-010060104098.ucsf.ed
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Kesshi Jordan <Kesshi.Jordan@ucsf.edu> <kjordan@codd.radiology.ucsf.edu>
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Kevin Sitek <ksitek@mit.edu>
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Kevin Sitek <ksitek@mit.edu> <sitek.kevin@gmail.com>
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Sin Kim <kimsin98@gmail.com>
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Sin Kim <kimsin98@gmail.com> <AKSoo@users.noreply.github.com>
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Koen Helwegen <kg.helwegen@gmail.com>
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Kornelius Podranski <kilo13@web.de>
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Kristofer Montazeri <kristofer.montazeri@gmail.com>
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Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com>
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Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <chris.gorgolewski@gmail.com>
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Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-Precision-M6500.(none)>
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Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <krzysztof.gorgolewski+fake@gmail.com>
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Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-Precision-M6500>
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Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filo-dtc-laptop>
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Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <filo@filolaptop>
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Krzysztof J. Gorgolewski <krzysztof.gorgolewski@gmail.com> <krzysztof.gorgolewski+fake@gmail.com>
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Kshitij Chawla <kc.insight.pi@gmail.com>
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Leonie Lampe <leonie.lampe@gmail.com>
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Lukas Snoek <lukassnoek@gmail.com>
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Marcel Falkiewicz <mfalkiewicz@gmail.com> <m.falkiewicz@nencki.gov.pl>
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Maria de Fatima Dias <mfatimamachado13@gmail.com>
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Maria de Fatima Dias <mfatimamachado13@gmail.com> <fmachado@dei.uc.pt>
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Martin Perez-Guevara <mperezguevara@gmail.com>
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Martin Norgaard <martin.noergaard@nru.dk>
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Martin Perez-Guevara <mperezguevara@gmail.com>
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Mathias Goncalves <goncalves.mathias@gmail.com> <mathiasg@mit.edu>
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Mathias Goncalves <goncalves.mathias@gmail.com> <mathiasg@stanford.edu>
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Mathieu Dubois <mathieu.dubois@icm-institute.org> <mathieu.dubois@cea.fr>
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Mathieu Dubois <mathieu.dubois@icm-institute.org> <duboismathieu_gaas@yahoo.fr>
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Mathieu Dubois <mathieu.dubois@icm-institute.org> <mathieu.dubois@cea.fr>
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Matteo Mancini <ingmatteomancini@gmail.com>
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Matteo Visconti di Oleggio Castello <matteo.visconti.gr@dartmouth.edu>
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Matteo Visconti di Oleggio Castello <matteo.visconti.gr@dartmouth.edu> <mvdoc.gr@dartmouth.edu>
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Matthew Cieslak <mattcieslak@gmail.com>
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Michael Clark <michael.clark195@gmail.com> <clarkmg@nih.gov>
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Michael Dayan <mdayan.research@gmail.com>
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Michael Dayan <mdayan.research@gmail.com> <mdayan.comp@gmail.com>
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Michael Dayan <mdayan.research@gmail.com> mick-d <mid2021@CHUCK.(none)>
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Michael Dayan <mdayan.research@gmail.com> <michael@mail.example.com>
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Michael Dayan <mdayan.research@gmail.com> mick-d <mid2021@CHUCK.(none)>
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Michael Joseph <josephmje.22@gmail.com>
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Michael Joseph <josephmje.22@gmail.com> <mjoseph@scclogin02.camhres.ca>
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Michael Philipp Notter <michaelnotter@hotmail.com>
@@ -171,8 +169,8 @@ Paul Kuntke <paul@42degreesoffreedom.com> <paul@kuntke.de>
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Paul Sharp <psharp1289@gmail.com>
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Ranjit Khanuja <ranjit.jhu@gmail.com>
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Rastko Ćirić <rc042010@mymail.pomona.edu>
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Rastko Ćirić <rc042010@mymail.pomona.edu> <rciric@users.noreply.github.com>
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Rastko Ćirić <rc042010@mymail.pomona.edu> <rastko@stanford.edu>
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Rastko Ćirić <rc042010@mymail.pomona.edu> <rciric@users.noreply.github.com>
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Raunak Jalan <ronakjalan98@gmail.com>
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Raunak Jalan <ronakjalan98@gmail.com> <41023976+RaunakJalan@users.noreply.github.com>
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Ross Markello <rossmarkello@gmail.com> <rdm222@cornell.edu>
@@ -186,15 +184,17 @@ Serge Koudoro <skab12@gmail.com>
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Sharad Sikka <ssikka25@gmail.com>
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Shariq Iqbal <shariqiqbal2810@gmail.com>
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Shariq Iqbal <shariqiqbal2810@gmail.com> <shariqiqbal2810@users.noreply.github.com>
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Shoshana Berleant <berleant@stanford.edu> Shoshana Berleant <nope>
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Shoshana Berleant <berleant@stanford.edu> <shoshber@users.noreply.github.com>
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Shoshana Berleant <berleant@stanford.edu> Shoshana Berleant <nope>
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Shoshana Berleant <berleant@stanford.edu> Ubuntu <ubuntu@ip-172-31-43-202.us-west-2.compute.internal>
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Simon Rothmei <srothmei@mailbox.tu-berlin.de>
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Simon Rothmei <srothmei@mailbox.tu-berlin.de> <srothmei@users.noreply.github.com>
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Sin Kim <kimsin98@gmail.com>
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Sin Kim <kimsin98@gmail.com> <AKSoo@users.noreply.github.com>
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Siqi Liu <lsqshr@gmail.com>
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Steven Giavasis <sgiava77@gmail.com>
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Steven Giavasis <sgiava77@gmail.com> <steven.giavasis@cmi-rsch-li001.childmind.org>
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Steven Giavasis <sgiava77@gmail.com> <sgiavasis@ieee.org>
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Steven Giavasis <sgiava77@gmail.com> <steven.giavasis@cmi-rsch-li001.childmind.org>
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Steven Tilley <stilley@hollandbloorview.ca> <steve@steventilley.com>
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Sulantha Mathotaarachchi <sulantha.s@gmail.com>
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Sunjae Shim <85246533+sjshim@users.noreply.github.com>

‎.zenodo.json‎

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"name": "Bernardoni, Fabio",
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"orcid": "0000-0002-5112-405X"
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},
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{
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"affiliation": "Sagol School of Neuroscience, Tel Aviv University",
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"name": "Ben-Zvi, Gal",
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"orcid": "0000-0002-5655-9423"
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},
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{
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"affiliation": "State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands",
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"name": "Kong, Xiang-Zhen",
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"affiliation": "University of Iowa",
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"name": "Welch, David"
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},
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{
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"affiliation": "Sagol School of Neuroscience, Tel Aviv University",
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"name": "Ben-Zvi, Gal",
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"orcid": "0000-0002-5655-9423"
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},
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{
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"affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences",
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"name": "Contier, Oliver",
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"orcid": "0000-0002-5312-6729"
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}
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],
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"keywords": ["neuroimaging", "workflow", "pipeline"],
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"keywords": [
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"neuroimaging",
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"workflow",
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"pipeline"
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],
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"license": "Apache-2.0",
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"upload_type": "software"
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}

‎doc/changelog/1.X.X-changelog.rst‎

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1.8.4 (September 01, 2022)
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==========================
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Bug-fix release in the 1.8.x series.
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This release sets a maximum traits version to avoid new, breaking changes.
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* MNT: Pin traits < 6.4 (https://github.com/nipy/nipype/pull/3501)
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* ENH: Add inputs to mrtrix3.DWIPreprocInputSpec and remove mandatory annotation for pe_dir (https://github.com/nipy/nipype/pull/3470)
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1.8.3 (July 14, 2022)
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=====================
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‎nipype/info.py‎

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# nipype version information
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# Remove .dev0 for release
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__version__ = "1.8.4.dev0"
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__version__ = "1.8.4"
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def get_nipype_gitversion():
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"sphinxcontrib-apidoc",
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],
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"duecredit": ["duecredit"],
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"maint": ["GitPython", "fuzzywuzzy"],
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"nipy": ["nitime", "nilearn", "dipy", "nipy", "matplotlib"],
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"profiler": ["psutil>=5.0"],
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"pybids": ["pybids>=0.7.0"],

‎tools/update_changes.sh‎

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echo $( printf "%${#HEADER}s" | tr " " "=" ) >> newchanges
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echo >> newchanges
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if [[ "x$2" != "x" ]]; then
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MILESTONE=${2:-""}
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if [[ "x$MILESTONE" != "x" ]]; then
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echo "(\`Full changelog <https://github.com/nipy/nipype/milestone/$2?closed=1>\`__)" >> newchanges
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‎tools/update_mailmap.sh‎

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#!/bin/bash
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# usage -> bash update_mailmap.sh <previous-release>
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# by default, will use the latest tag
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set -ux
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ROOT=$( git rev-parse --show-toplevel )
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MAILMAP=$ROOT/.mailmap
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LAST=$(git describe --tags `git rev-list --tags --max-count=1`)
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RELEASE=${1:-$LAST}
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IFS=$'\n'
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for NAME in $(git shortlog -nse $RELEASE.. | cut -f2-); do
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echo $NAME
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done
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# sort and write
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sort $MAILMAP > .tmpmailmap
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cp .tmpmailmap $MAILMAP
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rm .tmpmailmap

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