Merge pull request #3511 from nipy/rel/1.8.5

REL: 1.8.5

Author: effigies

.github/workflows/tutorials.yml

@@ -13,49 +13,55 @@ jobs:
   tutorial:
     runs-on: ubuntu-latest
     env:
-      BRANCH_NAME: ${{ github.head_ref || github.ref_name }}
+      BRANCH_NAME: ${{ github.ref_name }}
     steps:
       - name: Start time
         id: start
         run: echo "::set-output name=start_time::$(date +'%Y-%m-%dT%H:%M:%S%z')"
       - name: Trigger Nipype tutorial Github Action
         run: |
+          set -x
           curl -X POST \
           -H "Authorization: Bearer ${{ secrets.TUTORIAL_ACCESS_TOKEN }}" \
           -H "Accept: application/vnd.github+json" \
           https://api.github.com/repos/miykael/nipype_tutorial/actions/workflows/testing.yml/dispatches \
-          -d '{"nipype_branch": "'${BRANCH_NAME:4}'"}'
+          -d '{"ref": "master", "inputs": {"nipype_branch": "'${BRANCH_NAME}'"}}'
+          sleep 10
       - name: Check Action was successfully dispatched
         id: dispatched
         run: |
-          RUN_ID=$(curl -X POST \
-            -H "Accept: application/vnd.github+json" \
-            "https://api.github.com/repos/miykael/nipype_tutorial/actions/runs?created=>${{ steps.start.outputs.start_time }}&per_page=1" \
+          set -x
+          START=${{ steps.start.outputs.start_time }}
+          RUN_ID=$(curl -H "Accept: application/vnd.github+json" \
+            'https://api.github.com/repos/miykael/nipype_tutorial/actions/runs?created=>'${START}'&per_page=1' \
             | jq -r '.workflow_runs[0].id')
 
           # fail if not extracted
           [[ -n $RUN_ID ]] || exit 1
-          echo "::set-output name=run_id::$RUN_ID""
+          echo "::set-output name=run_id::$RUN_ID"
       - name: Check if action completed
-        timeout-minutes: 60
+        timeout-minutes: 120
         run: |
+          set -x
+          RUN_ID=${{ steps.dispatched.outputs.run_id }}
           while :
           do
             TIMESTAMP=$(date +'%Y-%m-%dT%H:%M:%S%z')
             # check status every 5 minutes
             STATUS=$(curl -H "Accept: application/vnd.github+json" \
-            "https://api.github.com/repos/miykael/nipype_tutorial/actions/runs/${{ steps.dispatched.outputs.run_id }}" \
+            https://api.github.com/repos/miykael/nipype_tutorial/actions/runs/${RUN_ID} \
             | jq -r '.conclusion')
             case $STATUS in
             success)
-              echo "[$TIMESTAMP] Tutorial run ${{ steps.dispatched.outputs.run_id }} completed successfully."
+              echo "[$TIMESTAMP] Tutorial run $RUN_ID completed successfully."
               exit 0
-            ;;
+              ;;
             failure)
-              echo "[$TIMESTAMP] Tutorial run ${{ steps.dispatched.outputs.run_id }} failed."
+              echo "[$TIMESTAMP] Tutorial run $RUN_ID failed."
               exit 1
-            ;;
+              ;;
             *)
               echo "[$TIMESTAMP] Conclusion ($STATUS) is not yet complete"
               sleep 300
+            esac
           done

.mailmap

@@ -58,6 +58,7 @@ David Ellis <dgellis90@gmail.com> <david.ellis@unmc.edu>
 David Mordom <moreno@cbs.mpg.de>
 David Welch <david.m.welch@gmail.com> <dmwelch@users.noreply.github.com>
 Dimitri Papadopoulos Orfanos <dimitri.papadopoulos@cea.fr>
+Dimitri Papadopoulos Orfanos <dimitri.papadopoulos@cea.fr> <3234522+DimitriPapadopoulos@users.noreply.github.com>
 Dmytro Belevtsoff <belevtsoff@gmail.com>
 Dorian Vogel <dorianvogel@gmail.com>
 Dylan M. Nielson <adenosine@gmail.com>

.zenodo.json

@@ -94,16 +94,16 @@
       "name": "Salo, Taylor",
       "orcid": "0000-0001-9813-3167"
     },
-    {
-      "affiliation": "Department of Electrical and Computer Engineering, Johns Hopkins University",
-      "name": "Dewey, Blake E",
-      "orcid": "0000-0003-4554-5058"
-    },
     {
       "affiliation": "University of Iowa",
       "name": "Johnson, Hans",
       "orcid": "0000-0001-9513-2660"
     },
+    {
+      "affiliation": "Department of Electrical and Computer Engineering, Johns Hopkins University",
+      "name": "Dewey, Blake E",
+      "orcid": "0000-0003-4554-5058"
+    },
     {
       "affiliation": "Molecular Imaging Research Center, CEA, France",
       "name": "Bougacha, Salma"
@@ -300,6 +300,11 @@
       "name": "Acland, Benjamin",
       "orcid": "0000-0001-6392-6634"
     },
+    {
+      "affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany",
+      "name": "Bernardoni, Fabio",
+      "orcid": "0000-0002-5112-405X"
+    },
     {
       "name": "Forbes, Jessica"
     },
@@ -313,11 +318,6 @@
       "name": "Gillman, Ashley",
       "orcid": "0000-0001-9130-1092"
     },
-    {
-      "affiliation": "Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany",
-      "name": "Bernardoni, Fabio",
-      "orcid": "0000-0002-5112-405X"
-    },
     {
       "affiliation": "Sagol School of Neuroscience, Tel Aviv University",
       "name": "Ben-Zvi, Gal",
@@ -414,6 +414,11 @@
     {
       "name": "Haselgrove, Christian"
     },
+    {
+      "affiliation": "CEA",
+      "name": "Papadopoulos Orfanos, Dimitri",
+      "orcid": "0000-0002-1242-8990"
+    },
     {
       "affiliation": "Department of Psychology, Stanford University; Parietal, INRIA",
       "name": "Durnez, Joke",
@@ -479,11 +484,6 @@
     {
       "name": "Correa, Carlos"
     },
-    {
-      "affiliation": "CEA",
-      "name": "Papadopoulos Orfanos, Dimitri",
-      "orcid": "0000-0002-1242-8990"
-    },
     {
       "affiliation": "Leibniz Institute for Neurobiology",
       "name": "Stadler, Jörg",

doc/changelog/1.X.X-changelog.rst

@@ -1,3 +1,19 @@
+1.8.5 (September 21, 2022)
+==========================
+
+Bug-fix release in the 1.8.x series.
+
+  * FIX: Use interpolation/method in numpy.percentile as available (https://github.com/nipy/nipype/pull/3506)
+  * FIX: Deployed Matlab applications must not call addpath() (https://github.com/nipy/nipype/pull/3509)
+  * FIX: Provide more runtime information when node execution fails (https://github.com/nipy/nipype/pull/3505)
+  * FIX: Fixed bug for work dirs longer than 255 characters, fixes #2061  (https://github.com/nipy/nipype/pull/3495)
+  * FIX: Update ApplyVDM to handle 4D inputs  (https://github.com/nipy/nipype/pull/3500)
+  * ENH: Explicitly specify write_text encoding format (https://github.com/nipy/nipype/pull/3508)
+  * DOC: Fix typos found by copdespell (https://github.com/nipy/nipype/pull/3510)
+  * MAINT: Add github action to trigger tutorials for release branches (https://github.com/nipy/nipype/pull/3504)
+  * CI: Set up build-test-deploy workflow on GHA (https://github.com/nipy/nipype/pull/3513)
+
+
 1.8.4 (September 01, 2022)
 ==========================
 

nipype/info.py

@@ -5,7 +5,7 @@
 
 # nipype version information
 # Remove .dev0 for release
-__version__ = "1.8.5.dev0"
+__version__ = "1.8.5"
 
 
 def get_nipype_gitversion():