Changelog etc for 0.10.0 release

Author: yarikoptic

CHANGELOG.md

@@ -4,6 +4,42 @@ All notable changes to this project will be documented (for humans) in this file
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
+## [0.10.0] - 2021-09-16
+
+Various improvements and compatibility/support (dcm2niix, datalad) changes.
+
+### Added
+
+- Add "AcquisitionTime" to the seqinfo ([#487][])
+- Add support for saving the Phoenix Report in the sourcedata folder ([#489][])
+
+### Changed
+
+- Python 3.5 EOLed, supported (tested) versions now: 3.6 - 3.9
+- In reprorin heuristic, allow for having multiple accessions since now there is
+  `-g all` groupping ([#508][])
+- For BIDS, produce a singular `scans.json` at the top level, and not one per
+  sub/ses (generates too many identical files) ([#507][])
+
+
+### Fixed
+
+- Compatibility with DataLad 0.15.0. Minimal version is 0.13.0 now.
+- Try to open top level BIDS .json files a number of times for adjustment,
+  so in the case of competition across parallel processes, they just end up
+  with the last one "winning over" ([#523][])
+- Don't fail if etelemetry.get_project returns None ([#501][])
+- Consistently use `n/a` for age/sex, also handle ?M for months ([#500][])
+- To avoid crashing on unrelated derivatives files etc, make `find_files` to
+  take list of topdirs (excluding `derivatives/` etc),
+  and look for _bold only under sub-* directories ([#496][])
+- Ensure bvec/bval files are only created for dwi output ([#491][])
+
+### Removed
+
+- In reproin heuristic, old hardcoded sequence renamings and filters ([#508][])
+
+
 ## [0.9.0] - 2020-12-23
 
 Various improvements and compatibility/support (dcm2niix, datalad,
@@ -22,12 +58,12 @@ target output directory during conversion.
   directory (with a `_heudiconv???` suffix, renamed into ultimate target
   name later on), which avoids hitting file size limits of /tmp ([#481][]) and
   helped to avoid a regression in dcm2nixx 1.0.20201102
-- #477 replaced `rec-<magnitude|phase>` with `part-<mag|phase>` now
-  that BIDS supports the part entity
-- #473 made default for CogAtlasID to be a TODO URL
-- #459 made AcquisitionTime used for acq_time scans file field
-- #451 retained sub-second resolution in scans files
-- #442 refactored code so there is now heudiconv.main.workflow for
+- [#477][] replaced `rec-<magnitude|phase>` with `part-<mag|phase>` now
+  hat BIDSsupports the part entity
+- [#473][] made default for CogAtlasID to be a TODO URL
+- [#459][] made AcquisitionTime used for acq_time scans file field
+- [#451][] retained sub-second resolution in scans files
+- [#442][] refactored code so there is now heudiconv.main.workflow for
   more convenient use as a Python module
 
 ### Fixed
@@ -350,6 +386,11 @@ TODO Summary
 [#368]: https://github.com/nipy/heudiconv/issues/368
 [#373]: https://github.com/nipy/heudiconv/issues/373
 [#485]: https://github.com/nipy/heudiconv/issues/485
+[#442]: https://github.com/nipy/heudiconv/issues/442
+[#451]: https://github.com/nipy/heudiconv/issues/451
+[#459]: https://github.com/nipy/heudiconv/issues/459
+[#473]: https://github.com/nipy/heudiconv/issues/473
+[#477]: https://github.com/nipy/heudiconv/issues/477
 [#293]: https://github.com/nipy/heudiconv/issues/293
 [#304]: https://github.com/nipy/heudiconv/issues/304
 [#306]: https://github.com/nipy/heudiconv/issues/306
@@ -391,3 +432,12 @@ TODO Summary
 [#464]: https://github.com/nipy/heudiconv/issues/464
 [#480]: https://github.com/nipy/heudiconv/issues/480
 [#481]: https://github.com/nipy/heudiconv/issues/481
+[#487]: https://github.com/nipy/heudiconv/issues/487
+[#489]: https://github.com/nipy/heudiconv/issues/489
+[#491]: https://github.com/nipy/heudiconv/issues/491
+[#496]: https://github.com/nipy/heudiconv/issues/496
+[#500]: https://github.com/nipy/heudiconv/issues/500
+[#501]: https://github.com/nipy/heudiconv/issues/501
+[#507]: https://github.com/nipy/heudiconv/issues/507
+[#508]: https://github.com/nipy/heudiconv/issues/508
+[#523]: https://github.com/nipy/heudiconv/issues/523

docs/conf.py

@@ -26,7 +26,7 @@
 # The short X.Y version
 version = ''
 # The full version, including alpha/beta/rc tags
-release = '0.9.0'
+release = '0.10.0'
 
 
 # -- General configuration ---------------------------------------------------

docs/installation.rst

@@ -26,7 +26,7 @@ If `Docker <https://docs.docker.com/install/>`_ is available on your system, you
 can visit `our page on Docker Hub <https://hub.docker.com/r/nipy/heudiconv/tags>`_
 to view available releases. To pull the latest release, run::
 
-    $ docker pull nipy/heudiconv:0.9.0
+    $ docker pull nipy/heudiconv:0.10.0
 
 
 Singularity
@@ -35,4 +35,4 @@ If `Singularity <https://www.sylabs.io/singularity/>`_ is available on your syst
 you can use it to pull and convert our Docker images! For example, to pull and
 build the latest release, you can run::
 
-    $ singularity pull docker://nipy/heudiconv:0.9.0
+    $ singularity pull docker://nipy/heudiconv:0.10.0

docs/usage.rst

@@ -82,7 +82,7 @@ The second script processes a DICOM directory with ``heudiconv`` using the built
     DCMDIR=${DCMDIRS[${SLURM_ARRAY_TASK_ID}]}
     echo Submitted directory: ${DCMDIR}
 
-    IMG="/singularity-images/heudiconv-0.9.0-dev.sif"
+    IMG="/singularity-images/heudiconv-0.10.0-dev.sif"
     CMD="singularity run -B ${DCMDIR}:/dicoms:ro -B ${OUTDIR}:/output -e ${IMG} --files /dicoms/ -o /output -f reproin -c dcm2niix -b notop --minmeta -l ."
 
     printf "Command:\n${CMD}\n"
@@ -97,7 +97,7 @@ This script creates the top-level bids files (e.g.,
     set -eu
 
     OUTDIR=${1}
-    IMG="/singularity-images/heudiconv-0.9.0-dev.sif"
+    IMG="/singularity-images/heudiconv-0.10.0-dev.sif"
     CMD="singularity run -B ${OUTDIR}:/output -e ${IMG} --files /output -f reproin --command populate-templates"
 
     printf "Command:\n${CMD}\n"

heudiconv/info.py

@@ -1,4 +1,4 @@
-__version__ = "0.9.0"
+__version__ = "0.10.0"
 __author__ = "HeuDiConv team and contributors"
 __url__ = "https://github.com/nipy/heudiconv"
 __packagename__ = 'heudiconv'