chore(pin): uv pip compile --upgrade --strip-extras pyproject.toml -o requirements.txt -p 3.11 -c -

Author: effigies

requirements.txt

@@ -1,12 +1,12 @@
 # This file was autogenerated by uv via the following command:
-#    uv pip compile pyproject.toml -c - -p 3.11 -o requirements.txt
+#    uv pip compile --strip-extras pyproject.toml -o requirements.txt -p 3.11 -c -
 astor==0.8.1
     # via formulaic
 attrs==23.2.0
     # via niworkflows
-bids-validator==1.14.4
+bids-validator==1.14.6
     # via pybids
-certifi==2024.2.2
+certifi==2024.7.4
     # via requests
 charset-normalizer==3.3.2
     # via requests
@@ -16,82 +16,91 @@ click==8.1.7
     # via
     #   nipype
     #   pybids
-contourpy==1.2.0
+contourpy==1.2.1
     # via matplotlib
 cycler==0.12.1
     # via matplotlib
 docopt==0.6.2
     # via num2words
 etelemetry==0.3.1
     # via nipype
-filelock==3.13.1
+filelock==3.15.4
     # via nipype
-fonttools==4.50.0
+fonttools==4.53.1
     # via matplotlib
 formulaic==0.5.2
     # via pybids
 greenlet==3.0.3
     # via sqlalchemy
-h5py==3.10.0
+h5py==3.11.0
     # via nitransforms
-idna==3.6
+idna==3.7
     # via requests
-imageio==2.34.0
+imageio==2.34.2
     # via scikit-image
 indexed-gzip==1.8.7
+    # via smriprep (pyproject.toml)
 interface-meta==1.3.0
     # via formulaic
 isodate==0.6.1
     # via rdflib
-jinja2==3.1.3
+jinja2==3.1.4
     # via niworkflows
-joblib==1.3.2
+joblib==1.4.2
     # via
     #   nilearn
     #   scikit-learn
 kiwisolver==1.4.5
     # via matplotlib
-lazy-loader==0.3
+lazy-loader==0.4
     # via scikit-image
 lockfile==0.12.2
+    # via smriprep (pyproject.toml)
 looseversion==1.3.0
     # via
+    #   smriprep (pyproject.toml)
     #   nipype
     #   niworkflows
-lxml==5.1.0
+lxml==5.2.2
     # via
     #   nilearn
     #   prov
     #   svgutils
 markupsafe==2.1.5
     # via jinja2
-matplotlib==3.8.3
+matplotlib==3.9.1
     # via
+    #   smriprep (pyproject.toml)
     #   niworkflows
     #   seaborn
-networkx==3.2.1
+networkx==3.3
     # via
     #   nipype
     #   prov
     #   scikit-image
 nibabel==5.2.1
     # via
+    #   smriprep (pyproject.toml)
     #   nilearn
     #   nipype
     #   nitransforms
     #   niworkflows
     #   pybids
-nilearn==0.10.3
+nilearn==0.10.4
     # via niworkflows
 nipype==1.8.6
-    # via niworkflows
+    # via
+    #   smriprep (pyproject.toml)
+    #   niworkflows
 nitransforms==23.0.1
     # via niworkflows
-niworkflows==1.10.1
+niworkflows==1.10.2
+    # via smriprep (pyproject.toml)
 num2words==0.5.13
     # via pybids
 numpy==1.26.4
     # via
+    #   smriprep (pyproject.toml)
     #   contourpy
     #   formulaic
     #   h5py
@@ -109,34 +118,38 @@ numpy==1.26.4
     #   scipy
     #   seaborn
     #   tifffile
-packaging==24.0
+    #   transforms3d
+packaging==24.1
     # via
+    #   smriprep (pyproject.toml)
     #   etelemetry
+    #   lazy-loader
     #   matplotlib
     #   nibabel
     #   nilearn
     #   nipype
     #   niworkflows
     #   scikit-image
-pandas==2.2.1
+pandas==2.2.2
     # via
     #   formulaic
     #   nilearn
     #   niworkflows
     #   pybids
     #   seaborn
-pillow==10.2.0
+pillow==10.4.0
     # via
     #   imageio
     #   matplotlib
     #   scikit-image
-prov==2.0.0
+prov==2.0.1
     # via nipype
-pybids==0.16.4
+pybids==0.16.5
     # via
+    #   smriprep (pyproject.toml)
     #   niworkflows
     #   templateflow
-pydot==2.0.0
+pydot==3.0.1
     # via nipype
 pyparsing==3.1.2
     # via
@@ -152,21 +165,23 @@ python-dateutil==2.9.0.post0
 pytz==2024.1
     # via pandas
 pyyaml==6.0.1
-    # via niworkflows
-rdflib==7.0.0
+    # via
+    #   smriprep (pyproject.toml)
+    #   niworkflows
+rdflib==6.3.2
     # via
     #   nipype
     #   prov
-requests==2.31.0
+requests==2.32.3
     # via
     #   etelemetry
     #   nilearn
     #   templateflow
-scikit-image==0.22.0
+scikit-image==0.23.2
     # via niworkflows
-scikit-learn==1.4.1.post1
+scikit-learn==1.4.2
     # via nilearn
-scipy==1.11.4
+scipy==1.13.1
     # via
     #   formulaic
     #   nilearn
@@ -184,31 +199,33 @@ six==1.16.0
     # via
     #   isodate
     #   python-dateutil
-sqlalchemy==2.0.28
+sqlalchemy==2.0.31
     # via pybids
 svgutils==0.3.4
     # via niworkflows
 templateflow==24.2.0
-    # via niworkflows
-threadpoolctl==3.4.0
+    # via
+    #   smriprep (pyproject.toml)
+    #   niworkflows
+threadpoolctl==3.5.0
     # via scikit-learn
-tifffile==2024.2.12
+tifffile==2024.7.2
     # via scikit-image
-tqdm==4.66.2
+tqdm==4.66.4
     # via templateflow
 traits==6.3.2
     # via
     #   nipype
     #   niworkflows
-transforms3d==0.4.1
+transforms3d==0.4.2
     # via niworkflows
-typing-extensions==4.10.0
+typing-extensions==4.12.2
     # via
     #   formulaic
     #   sqlalchemy
 tzdata==2024.1
     # via pandas
-urllib3==2.2.1
+urllib3==2.2.2
     # via requests
 wrapt==1.16.0
     # via formulaic