@@ -344,34 +344,31 @@ def _get_ants_args(self):
344344 # Set the template resolution.
345345 resolution = self .inputs .template_resolution
346346
347+ _template_fmt = op .join (mni_template , '%dmm_%s.nii.gz' )
347348 # If explicit masking is enabled...
348349 if self .inputs .explicit_masking :
349350 # Mask the template image with the template mask.
350351 # Do not use a fixed mask during registration.
351- _template_fmt = op .join (mni_template , '%dmm_%s.nii.gz' )
352352 args ['fixed_image' ] = mask (
353353 _template_fmt % (resolution , self .inputs .reference ),
354- _template_fmt % (resolution , 'brainmask.nii.gz ' ),
354+ _template_fmt % (resolution , 'brainmask' ),
355355 "fixed_masked.nii.gz" )
356356
357357 # If a lesion mask is provided...
358358 if isdefined (self .inputs .lesion_mask ):
359359 # Create a cost function mask with the form: [global mask]
360360 # Use this as the fixed mask.
361361 args ['fixed_image_mask' ] = create_cfm (
362- op . join ( mni_template , '%dmm_brainmask.nii.gz' % resolution ),
362+ _template_fmt % ( resolution , 'brainmask' ),
363363 lesion_mask = None ,
364364 global_mask = True )
365365
366366 # If explicit masking is disabled...
367367 else :
368368 # Use the raw template as the fixed image.
369- args ['fixed_image' ] = op .join (
370- mni_template ,
371- '%dmm_%s.nii.gz' % (resolution , self .inputs .reference ))
369+ args ['fixed_image' ] = _template_fmt % (resolution , self .inputs .reference )
372370 # Use the template mask as the fixed mask.
373- args ['fixed_image_mask' ] = op .join (
374- mni_template , '%dmm_brainmask.nii.gz' % resolution )
371+ args ['fixed_image_mask' ] = _template_fmt % (resolution , 'brainmask' )
375372
376373 return args
377374
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