fastk 1.1.0 (new formula)

Author: ankane

Formula/f/fastk.rb

@@ -0,0 +1,35 @@
+class Fastk < Formula
+  desc "K-mer counter for high-fidelity shotgun datasets"
+  homepage "https://github.com/thegenemyers/FASTK"
+  url "https://github.com/thegenemyers/FASTK/archive/refs/tags/v1.1.0.tar.gz"
+  sha256 "28a2de98ede77d4b4476596851f92413a9d99a1d3341afc6682d5333ac797f07"
+  license all_of: [
+    "BSD-3-Clause",
+    { all_of: ["MIT", "BSD-3-Clause"] }, # HTSLIB
+    "MIT", # LIBDEFLATE
+  ]
+  head "https://github.com/thegenemyers/FASTK.git", branch: "master"
+
+  depends_on "xz"
+
+  uses_from_macos "bzip2"
+  uses_from_macos "curl"
+  uses_from_macos "zlib"
+
+  def install
+    ENV.deparallelize
+
+    mkdir bin
+    system "make"
+    system "make", "install", "DEST_DIR=#{bin}"
+  end
+
+  test do
+    (testpath/"test.fasta").write <<~EOS
+      >U00096.2:1-70
+      AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
+    EOS
+    system bin/"FastK", "test.fasta"
+    assert_path_exists "test.hist"
+  end
+end