update GitHub Actions workflows

Author: sujaypatil96

.github/workflows/build-publish-documentation.yaml

@@ -5,11 +5,18 @@ on:
   push:
     branches:
       - main
+  pull_request:
+    branches:
+      - main
 
 jobs:
   github-pages:
     runs-on: ubuntu-latest
 
+    strategy:
+      matrix:
+        python-version: [ "3.10" ]
+
     permissions:
       contents: write
 
@@ -18,40 +25,30 @@ jobs:
       #       check-out repo and set-up python
       #----------------------------------------------
       - name: Check out repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4.2.2
         with:
           fetch-depth: 0 # fetch all commits/branches so that mike works
 
-      - name: Setup Python 3.9
-        uses: actions/setup-python@v4
+      - name: Setup Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5.6.0
+        id: setup-python
         with:
-          python-version: 3.9
+          python-version: ${{ matrix.python-version }}
+          cache: 'poetry'
 
       #----------------------------------------------
       #          install & configure poetry
       #----------------------------------------------
       - name: Install Poetry
-        uses: snok/install-poetry@v1.3
-        with:
-          virtualenvs-create: true
-          virtualenvs-in-project: true
-
-      #----------------------------------------------
-      #       load cached venv if cache exists      
-      #----------------------------------------------
-      - name: Load cached venv
-        id: cached-poetry-dependencies
-        uses: actions/cache@v3
-        with:
-          path: .venv
-          key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}
+        run: |
+          pipx install poetry
+          pipx inject poetry poetry-dynamic-versioning
 
       #----------------------------------------------
-      # install dependencies if cache does not exist 
+      #             install dependencies
       #----------------------------------------------
       - name: Install dependencies
-        if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
-        run: poetry install --no-interaction --no-root
+        run: poetry install --no-interaction --with docs --no-root --all-extras
 
       - name: Configure git user
         run: |

.github/workflows/codespell.yml

@@ -16,7 +16,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4.2.2
 
       - name: Codespell
-        uses: codespell-project/actions-codespell@v2
+        uses: codespell-project/actions-codespell@v2.1

.github/workflows/main.yaml

@@ -6,59 +6,48 @@ name: Build and test linkml-model
 
 on:
   pull_request:
-    branches: [ main ]
-    types: [ opened, synchronize, reopened ]
+    branches: [main]
+    types: [opened, synchronize, reopened]
 
 jobs:
   test:
-
     runs-on: ubuntu-latest
+
     strategy:
       matrix:
         python-version: ["3.9", "3.10"]
 
     steps:
-
       #----------------------------------------------
       #       check-out repo and set-up python
       #----------------------------------------------
       - name: Check out repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4.2.2
+        with:
+          fetch-depth: 0
 
       - name: Set up Python ${{ matrix.python-version }}
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5.6.0
         with:
           python-version: ${{ matrix.python-version }}
+          cache: "poetry"
 
       #----------------------------------------------
       #          install & configure poetry
       #----------------------------------------------
       - name: Install Poetry
-        uses: snok/install-poetry@v1.3
-        with:
-          virtualenvs-create: true
-          virtualenvs-in-project: true
+        run: |
+          pipx install poetry
+          pipx inject poetry poetry-dynamic-versioning
 
       #----------------------------------------------
-      #       load cached venv if cache exists      
-      #----------------------------------------------
-      - name: Load cached venv
-        id: cached-poetry-dependencies
-        uses: actions/cache@v3
-        with:
-          path: .venv
-          key: venv-${{ runner.os }}-${{ hashFiles('**/poetry.lock') }}
-
-      #----------------------------------------------
-      # install dependencies if cache does not exist 
+      #             install dependencies
       #----------------------------------------------
       - name: Install dependencies
-        if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
-        run: poetry install --no-interaction --no-root
+        run: oetry install --no-interaction --all-extras --no-root
 
       #----------------------------------------------
-      #              run test suite   
+      #              run test suite
       #----------------------------------------------
       - name: Run tests
         run: make test
-

.github/workflows/release.yaml

@@ -14,20 +14,19 @@ jobs:
 
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4.2.2
         with:
           fetch-depth: 0 # fetch all commits/branches so that mike works
 
       - name: Set up Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5.6.0
         with:
-          python-version: 3.9
+          python-version: 3.10
 
       - name: Install Poetry
-        uses: snok/install-poetry@v1.3
-        with:
-          virtualenvs-create: true
-          virtualenvs-in-project: true
+        run: |
+          pipx install poetry
+          pipx inject poetry poetry-dynamic-versioning
 
       - name: Install dependencies
         run: poetry install --no-interaction
@@ -39,14 +38,14 @@ jobs:
 
       - name: Publish distribution to PyPI
         if: github.repository == 'linkml/linkml-model'
-        uses: pypa/gh-action-pypi-publish@v1.2.2
+        uses: pypa/gh-action-pypi-publish@v1.12.4
         with:
           user: __token__
           password: ${{ secrets.pypi_password }}
 
       - name: Parse version from tag
         id: version
-        uses: release-kit/semver@v2
+        uses: release-kit/semver@v2.0.7
 
       - name: Configure git user
         run: |

.github/workflows/validate-yaml-syntax.yaml

@@ -11,7 +11,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out repository
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4.2.2
 
       - name: Validate YAML file
         run: yamllint -c .yamllint-config linkml_model/model/schema/*.yaml