Increase length threshold for Prodigal command in PLAST class

k-krakowski · k-krakowski · commit 4013206afcd9 · 2025-11-26T20:09:40.000+01:00
diff --git a/plast/plast.py b/plast/plast.py
@@ -388,7 +388,7 @@ def load_nt_fasta(self, input_fasta: Union[str, any]) -> "PLAST":
                     f" -a {output_file.name}"
                     f" -g 11 -q"
                 )
-                if self.length < 100000:
+                if self.length < 200000:
                     cmd += " -p meta"
                 self.debug(f"Running Prodigal: {cmd}")
                 try:

Original file line number	Diff line number	Diff line change
`@@ -388,7 +388,7 @@ def load_nt_fasta(self, input_fasta: Union[str, any]) -> "PLAST":`
`388`	`388`	`f" -a {output_file.name}"`
`389`	`389`	`f" -g 11 -q"`
`390`	`390`	`)`
`391`		`- if self.length < 100000:`
	`391`	`+ if self.length < 200000:`
`392`	`392`	`cmd += " -p meta"`
`393`	`393`	`self.debug(f"Running Prodigal: {cmd}")`
`394`	`394`	`try:`