Merge pull request #21 from juliangehring/changelog

Update news for v0.1.0

Author: juliangehring

NEWS.md

@@ -0,0 +1,50 @@
+# MultipleTesting.jl News and Changes
+
+## Version 0.1.0
+
+### New Features
+
+- New π0 estimators: BUM, Censored BUM, Flat Grenander
+- New p-value adjustment methods: Forward Step, Benjamini-Liu
+- BUM model for simulating p-value distributions
+- Fast isotonic regression
+- Reference list of related software packages in documentation
+
+
+### Changes
+
+- Grenander ECDF estimator
+- Immutable method types
+- Default α value for Two Step constructor
+- Tests use new julia 0.5 base testing framework
+- Documentation moved to 'docs' directory
+
+
+### Removed
+
+- Test coverage reporting through coveralls
+
+
+### Support
+
+- Requires julia 0.5
+
+
+## Version 0.0.2
+
+
+### New features
+
+- New π0 estimators: Two Step, Right Boundary
+- New p-value adjustment methods: Benjamini-Hochberg Adaptive, Oracle, Sidak
+- Package precompilation
+
+
+### Changes / Changed
+
+- Redefined Oracle Benjamini-Hochberg as Adaptive Benjamini-Hochberg procedure
+
+
+### Support
+
+- Requires julia 0.4

README.md

@@ -1,6 +1,6 @@
 # MultipleTesting
 
-The `MultipleTesting` package offers common algorithms for p-value adjustment and π0 estimation.
+The `MultipleTesting` package offers common algorithms for p-value adjustment and the estimation of the proportion π₀ of true null hypotheses.
 
 ![xkcd p-value guide](pvalues.png)
 
@@ -15,18 +15,18 @@ The `MultipleTesting` package offers common algorithms for p-value adjustment an
 
 ## Features
 
-### p-values adjustment
+### Adjustment of p-values
 
 * Bonferroni
 * Benjamini-Hochberg
-* Benjamini-Hochberg "Adaptive" with known π0 or π0 estimation method (see section below)
+* Adaptive Benjamini-Hochberg with known π₀ or π₀ estimation method (see section below)
 * Benjamini-Yekutieli
 * Benjamini-Liu
 * Hochberg
 * Holm
 * Hommel
 * Sidak
-* ForwardStop
+* Forward Stop
 
 ```julia
 adjust(pvals, Bonferroni())
@@ -43,17 +43,17 @@ adjust(pvals, ForwardStop())
 ```
 
 
-### π0 estimation
+### Estimation of π₀
 
 * Storey
 * Storey's closed-form bootstrap
-* Least SLope (LSL)
-* Two STep (TST)
+* Least Slope
+* Two Step
 * RightBoundary (Storey's estimate with dynamically chosen λ)
+* Beta-Uniform Mixture (BUM)
 * Censored BUM
-* BUM
-* FlatGrenander
-* Oracle for known π0
+* Flat Grenander
+* Oracle for known π₀
 
 ```julia
 estimate_pi0(pvals, Storey())