Commit 287154d
Release (#282)
* Improve workflow handling (#118)
* Create common action for all workflows and split them into multiple files
* Dokken/update fspace and wmtgs (#127)
* fix runs-on
* Minor improvements in linearelasticity.md (#124)
* Fix various things on release branch
* Try adding trame
* Revert fundamentals
* Membrane code
* More updates due to autoformatting
* Lagrange -> CG back conversion
* Change to github image
---------
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
* Update petsc arches
* Fix bounding boxes and more (#135)
* Start fixing code for nightly build
* rerun all files
* Try fixing subdomains
* Fix meshio
* PETSc python API update (#137)
* Resolve #136
* Fixes related to: FEniCS/dolfinx#2703
* Update changelog
* Make sure all notebooks run. Change to pathlib in some examples
* Api changes related to: FEniCS/dolfinx#2763 (#142)
* Bump version numbers
* Bump version numbers (#149)
* Fix petsc arch
* Prepare v0.7.1 (#154)
* Merge branch 'main' into release and bump versions
* Delete obsolete file
* Temporary shift path in nightly test
* Make sure there are no warnigns in build
* Tabulation
* Updates compatible with nightly branch of DOLFINx (#156)
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`
* More updates
* And more
* Last vector element updates
* Bump pyvista and dolfinx to v0.7.2 (#159)
* Bump pyvista and dolfinx to v0.7.2
* remove -r
* Add further pyvista deps
* Bump versions
* Update petsc solver and pc links. Resolves #143 (#160)
* Fix typo and issue Issue on page /fem.html #122 (#161)
* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion
* Update backend in workflow
* Fix broken link (#140) + http:// to https:// (#162)
* Run book build prior to parallel run
* Add back write frame
* Fix wrong link
* Fix typo in changelog
* Merge main into release (#189)
* Merge main into release
* Apply suggestions from code review
* Various fixes when reading through the diff
* Further fixes
* add missing checkout (#191)
* add missing checkout
* Add test docker on release PR and release (only push on tag
* Remove unused import
* Update text to resolve #194 (#195)
* Dokken/update nonlin options (#203)
* Update options for non-linear solver to sensible choice, ref #200
* Update docker path
* Update python file as well
* Update config ptr (#207)
* Pressure correction equation fix (#196)
* Update fundamentals.md (#199)
on line 110, updated a typesetting error in equation (3)
* Change from vector to petsc_vec (#206)
* dolfinx.fem.Form changed to dolfinx.fem.form (#213)
* Update compiler_parameters.ipynb
In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.
* jupytext sync
* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem
* Update book_stable.yml
* Update test_stable.yml
* Fix python path in test
* Fix CI (#227)
* Bump docker/build-push-action from 5 to 6 (#221)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)
---
updated-dependencies:
- dependency-name: actions/configure-pages
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update book_stable.yml (#225)
* Update book_stable.yml
* Update test_stable.yml
* resolve #224 (#226)
* Update test_stable.yml
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update test_stable.yml (#235)
* Add libgl flag to ci (#238)
* Dokken/bump release (#249)
* Update elasticity_scaling.md (#242)
* Improve workflow handling (#118)
* Create common action for all workflows and split them into multiple files
* Dokken/update fspace and wmtgs (#127)
* fix runs-on
* Minor improvements in linearelasticity.md (#124)
* Fix various things on release branch
* Try adding trame
* Revert fundamentals
* Membrane code
* More updates due to autoformatting
* Lagrange -> CG back conversion
* Change to github image
---------
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
* Update petsc arches
* Fix bounding boxes and more (#135)
* Start fixing code for nightly build
* rerun all files
* Try fixing subdomains
* Fix meshio
* PETSc python API update (#137)
* Resolve #136
* Fixes related to: FEniCS/dolfinx#2703
* Update changelog
* Make sure all notebooks run. Change to pathlib in some examples
* Api changes related to: FEniCS/dolfinx#2763 (#142)
* Bump version numbers
* Bump version numbers (#149)
* Fix petsc arch
* Prepare v0.7.1 (#154)
* Merge branch 'main' into release and bump versions
* Delete obsolete file
* Temporary shift path in nightly test
* Make sure there are no warnigns in build
* Tabulation
* Updates compatible with nightly branch of DOLFINx (#156)
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`
* More updates
* And more
* Last vector element updates
* Bump pyvista and dolfinx to v0.7.2 (#159)
* Bump pyvista and dolfinx to v0.7.2
* remove -r
* Add further pyvista deps
* Bump versions
* Update petsc solver and pc links. Resolves #143 (#160)
* Fix typo and issue Issue on page /fem.html #122 (#161)
* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion
* Update backend in workflow
* Fix broken link (#140) + http:// to https:// (#162)
* Run book build prior to parallel run
* Add back write frame
* Fix wrong link
* Fix typo in changelog
* Merge main into release (#189)
* Merge main into release
* Apply suggestions from code review
* Various fixes when reading through the diff
* Further fixes
* add missing checkout (#191)
* add missing checkout
* Add test docker on release PR and release (only push on tag
* Remove unused import
* Update text to resolve #194 (#195)
* Dokken/update nonlin options (#203)
* Update options for non-linear solver to sensible choice, ref #200
* Update docker path
* Update python file as well
* Update config ptr (#207)
* Pressure correction equation fix (#196)
* Update fundamentals.md (#199)
on line 110, updated a typesetting error in equation (3)
* Change from vector to petsc_vec (#206)
* dolfinx.fem.Form changed to dolfinx.fem.form (#213)
* Update compiler_parameters.ipynb
In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.
* jupytext sync
* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem
* Update book_stable.yml
* Update test_stable.yml
* Fix python path in test
* Fix CI (#227)
* Bump docker/build-push-action from 5 to 6 (#221)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)
---
updated-dependencies:
- dependency-name: actions/configure-pages
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update book_stable.yml (#225)
* Update book_stable.yml
* Update test_stable.yml
* resolve #224 (#226)
* Update test_stable.yml
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update test_stable.yml (#235)
* Add libgl flag to ci (#238)
* Update elasticity_scaling.md
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update navierstokes.md (#247)
* Improve workflow handling (#118)
* Create common action for all workflows and split them into multiple files
* Dokken/update fspace and wmtgs (#127)
* fix runs-on
* Minor improvements in linearelasticity.md (#124)
* Fix various things on release branch
* Try adding trame
* Revert fundamentals
* Membrane code
* More updates due to autoformatting
* Lagrange -> CG back conversion
* Change to github image
---------
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
* Update petsc arches
* Fix bounding boxes and more (#135)
* Start fixing code for nightly build
* rerun all files
* Try fixing subdomains
* Fix meshio
* PETSc python API update (#137)
* Resolve #136
* Fixes related to: FEniCS/dolfinx#2703
* Update changelog
* Make sure all notebooks run. Change to pathlib in some examples
* Api changes related to: FEniCS/dolfinx#2763 (#142)
* Bump version numbers
* Bump version numbers (#149)
* Fix petsc arch
* Prepare v0.7.1 (#154)
* Merge branch 'main' into release and bump versions
* Delete obsolete file
* Temporary shift path in nightly test
* Make sure there are no warnigns in build
* Tabulation
* Updates compatible with nightly branch of DOLFINx (#156)
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`
* More updates
* And more
* Last vector element updates
* Bump pyvista and dolfinx to v0.7.2 (#159)
* Bump pyvista and dolfinx to v0.7.2
* remove -r
* Add further pyvista deps
* Bump versions
* Update petsc solver and pc links. Resolves #143 (#160)
* Fix typo and issue Issue on page /fem.html #122 (#161)
* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion
* Update backend in workflow
* Fix broken link (#140) + http:// to https:// (#162)
* Run book build prior to parallel run
* Add back write frame
* Fix wrong link
* Fix typo in changelog
* Merge main into release (#189)
* Merge main into release
* Apply suggestions from code review
* Various fixes when reading through the diff
* Further fixes
* add missing checkout (#191)
* add missing checkout
* Add test docker on release PR and release (only push on tag
* Remove unused import
* Update text to resolve #194 (#195)
* Dokken/update nonlin options (#203)
* Update options for non-linear solver to sensible choice, ref #200
* Update docker path
* Update python file as well
* Update config ptr (#207)
* Pressure correction equation fix (#196)
* Update fundamentals.md (#199)
on line 110, updated a typesetting error in equation (3)
* Change from vector to petsc_vec (#206)
* dolfinx.fem.Form changed to dolfinx.fem.form (#213)
* Update compiler_parameters.ipynb
In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.
* jupytext sync
* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem
* Update book_stable.yml
* Update test_stable.yml
* Fix python path in test
* Fix CI (#227)
* Bump docker/build-push-action from 5 to 6 (#221)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)
---
updated-dependencies:
- dependency-name: actions/configure-pages
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update book_stable.yml (#225)
* Update book_stable.yml
* Update test_stable.yml
* resolve #224 (#226)
* Update test_stable.yml
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update test_stable.yml (#235)
* Add libgl flag to ci (#238)
* Update navierstokes.md
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Adding Acoustic Helmholtz equation to the tutorial (#232)
* Acoustic Helmholtz scripts
helmholtz.md contains the mathematical derivation of the variational formulation, while the helmholtz_code scripts contain the implementation.
* Fix
* equations rendering bug fixed
* Update helmholtz.md
Equations rendering second fix, missing spaces
* Major updates to helmholtz
* Add to toc
* Updates to helmholtz
* Update to work in parallel
---------
Co-authored-by: jorgensd <dokken92@gmail.com>
* Make helmholtz backwards compatible (#248)
* Native arm build (#240)
* Try new publish workflow
* Fix platform choice
* Update workflow to merge artifacts to one place
* Set retention days to minimum
* Fix name
* change name to pattern
* Minor improvements
* Try new strategy
* Remove duplicate tag
* Revert platform tags
* Use correct dockerfile
* remove first login
* Add merge skip if not pushing on release or tagging
* Set push to false as we don't need the images before merging.
* Remove push
* Remove conditional to check that simpler code runs
* Add back pushtrue
* Revert comment
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: mleoni-pf <160495781+mleoni-pf@users.noreply.github.com>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Antonio Baiano Svizzero <107617271+bayswiss@users.noreply.github.com>
* Update linearelasticity_code.ipynb (#246)
* Improve workflow handling (#118)
* Create common action for all workflows and split them into multiple files
* Dokken/update fspace and wmtgs (#127)
* fix runs-on
* Minor improvements in linearelasticity.md (#124)
* Fix various things on release branch
* Try adding trame
* Revert fundamentals
* Membrane code
* More updates due to autoformatting
* Lagrange -> CG back conversion
* Change to github image
---------
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
* Update petsc arches
* Fix bounding boxes and more (#135)
* Start fixing code for nightly build
* rerun all files
* Try fixing subdomains
* Fix meshio
* PETSc python API update (#137)
* Resolve #136
* Fixes related to: FEniCS/dolfinx#2703
* Update changelog
* Make sure all notebooks run. Change to pathlib in some examples
* Api changes related to: FEniCS/dolfinx#2763 (#142)
* Bump version numbers
* Bump version numbers (#149)
* Fix petsc arch
* Prepare v0.7.1 (#154)
* Merge branch 'main' into release and bump versions
* Delete obsolete file
* Temporary shift path in nightly test
* Make sure there are no warnigns in build
* Tabulation
* Updates compatible with nightly branch of DOLFINx (#156)
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`
* More updates
* And more
* Last vector element updates
* Bump pyvista and dolfinx to v0.7.2 (#159)
* Bump pyvista and dolfinx to v0.7.2
* remove -r
* Add further pyvista deps
* Bump versions
* Update petsc solver and pc links. Resolves #143 (#160)
* Fix typo and issue Issue on page /fem.html #122 (#161)
* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion
* Update backend in workflow
* Fix broken link (#140) + http:// to https:// (#162)
* Run book build prior to parallel run
* Add back write frame
* Fix wrong link
* Fix typo in changelog
* Merge main into release (#189)
* Merge main into release
* Apply suggestions from code review
* Various fixes when reading through the diff
* Further fixes
* add missing checkout (#191)
* add missing checkout
* Add test docker on release PR and release (only push on tag
* Remove unused import
* Update text to resolve #194 (#195)
* Dokken/update nonlin options (#203)
* Update options for non-linear solver to sensible choice, ref #200
* Update docker path
* Update python file as well
* Update config ptr (#207)
* Pressure correction equation fix (#196)
* Update fundamentals.md (#199)
on line 110, updated a typesetting error in equation (3)
* Change from vector to petsc_vec (#206)
* dolfinx.fem.Form changed to dolfinx.fem.form (#213)
* Update compiler_parameters.ipynb
In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.
* jupytext sync
* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem
* Update book_stable.yml
* Update test_stable.yml
* Fix python path in test
* Fix CI (#227)
* Bump docker/build-push-action from 5 to 6 (#221)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)
---
updated-dependencies:
- dependency-name: actions/configure-pages
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update book_stable.yml (#225)
* Update book_stable.yml
* Update test_stable.yml
* resolve #224 (#226)
* Update test_stable.yml
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update test_stable.yml (#235)
* Add libgl flag to ci (#238)
* Update linearelasticity_code.ipynb
* Add sync with `python3 -m jupytext --sync */*.ipynb`
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update linearelasticity_code.ipynb (#245)
* Improve workflow handling (#118)
* Create common action for all workflows and split them into multiple files
* Dokken/update fspace and wmtgs (#127)
* fix runs-on
* Minor improvements in linearelasticity.md (#124)
* Fix various things on release branch
* Try adding trame
* Revert fundamentals
* Membrane code
* More updates due to autoformatting
* Lagrange -> CG back conversion
* Change to github image
---------
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
* Update petsc arches
* Fix bounding boxes and more (#135)
* Start fixing code for nightly build
* rerun all files
* Try fixing subdomains
* Fix meshio
* PETSc python API update (#137)
* Resolve #136
* Fixes related to: FEniCS/dolfinx#2703
* Update changelog
* Make sure all notebooks run. Change to pathlib in some examples
* Api changes related to: FEniCS/dolfinx#2763 (#142)
* Bump version numbers
* Bump version numbers (#149)
* Fix petsc arch
* Prepare v0.7.1 (#154)
* Merge branch 'main' into release and bump versions
* Delete obsolete file
* Temporary shift path in nightly test
* Make sure there are no warnigns in build
* Tabulation
* Updates compatible with nightly branch of DOLFINx (#156)
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`
* More updates
* And more
* Last vector element updates
* Bump pyvista and dolfinx to v0.7.2 (#159)
* Bump pyvista and dolfinx to v0.7.2
* remove -r
* Add further pyvista deps
* Bump versions
* Update petsc solver and pc links. Resolves #143 (#160)
* Fix typo and issue Issue on page /fem.html #122 (#161)
* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion
* Update backend in workflow
* Fix broken link (#140) + http:// to https:// (#162)
* Run book build prior to parallel run
* Add back write frame
* Fix wrong link
* Fix typo in changelog
* Merge main into release (#189)
* Merge main into release
* Apply suggestions from code review
* Various fixes when reading through the diff
* Further fixes
* add missing checkout (#191)
* add missing checkout
* Add test docker on release PR and release (only push on tag
* Remove unused import
* Update text to resolve #194 (#195)
* Dokken/update nonlin options (#203)
* Update options for non-linear solver to sensible choice, ref #200
* Update docker path
* Update python file as well
* Update config ptr (#207)
* Pressure correction equation fix (#196)
* Update fundamentals.md (#199)
on line 110, updated a typesetting error in equation (3)
* Change from vector to petsc_vec (#206)
* dolfinx.fem.Form changed to dolfinx.fem.form (#213)
* Update compiler_parameters.ipynb
In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.
* jupytext sync
* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem
* Update book_stable.yml
* Update test_stable.yml
* Fix python path in test
* Fix CI (#227)
* Bump docker/build-push-action from 5 to 6 (#221)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)
---
updated-dependencies:
- dependency-name: actions/configure-pages
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update book_stable.yml (#225)
* Update book_stable.yml
* Update test_stable.yml
* resolve #224 (#226)
* Update test_stable.yml
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update test_stable.yml (#235)
* Add libgl flag to ci (#238)
* Update linearelasticity_code.ipynb
* Add sync with
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update linearelasticity_code.ipynb (#244)
* Improve workflow handling (#118)
* Create common action for all workflows and split them into multiple files
* Dokken/update fspace and wmtgs (#127)
* fix runs-on
* Minor improvements in linearelasticity.md (#124)
* Fix various things on release branch
* Try adding trame
* Revert fundamentals
* Membrane code
* More updates due to autoformatting
* Lagrange -> CG back conversion
* Change to github image
---------
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
* Update petsc arches
* Fix bounding boxes and more (#135)
* Start fixing code for nightly build
* rerun all files
* Try fixing subdomains
* Fix meshio
* PETSc python API update (#137)
* Resolve #136
* Fixes related to: FEniCS/dolfinx#2703
* Update changelog
* Make sure all notebooks run. Change to pathlib in some examples
* Api changes related to: FEniCS/dolfinx#2763 (#142)
* Bump version numbers
* Bump version numbers (#149)
* Fix petsc arch
* Prepare v0.7.1 (#154)
* Merge branch 'main' into release and bump versions
* Delete obsolete file
* Temporary shift path in nightly test
* Make sure there are no warnigns in build
* Tabulation
* Updates compatible with nightly branch of DOLFINx (#156)
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`
* More updates
* And more
* Last vector element updates
* Bump pyvista and dolfinx to v0.7.2 (#159)
* Bump pyvista and dolfinx to v0.7.2
* remove -r
* Add further pyvista deps
* Bump versions
* Update petsc solver and pc links. Resolves #143 (#160)
* Fix typo and issue Issue on page /fem.html #122 (#161)
* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion
* Update backend in workflow
* Fix broken link (#140) + http:// to https:// (#162)
* Run book build prior to parallel run
* Add back write frame
* Fix wrong link
* Fix typo in changelog
* Merge main into release (#189)
* Merge main into release
* Apply suggestions from code review
* Various fixes when reading through the diff
* Further fixes
* add missing checkout (#191)
* add missing checkout
* Add test docker on release PR and release (only push on tag
* Remove unused import
* Update text to resolve #194 (#195)
* Dokken/update nonlin options (#203)
* Update options for non-linear solver to sensible choice, ref #200
* Update docker path
* Update python file as well
* Update config ptr (#207)
* Pressure correction equation fix (#196)
* Update fundamentals.md (#199)
on line 110, updated a typesetting error in equation (3)
* Change from vector to petsc_vec (#206)
* dolfinx.fem.Form changed to dolfinx.fem.form (#213)
* Update compiler_parameters.ipynb
In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.
* jupytext sync
* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem
* Update book_stable.yml
* Update test_stable.yml
* Fix python path in test
* Fix CI (#227)
* Bump docker/build-push-action from 5 to 6 (#221)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)
---
updated-dependencies:
- dependency-name: actions/configure-pages
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update book_stable.yml (#225)
* Update book_stable.yml
* Update test_stable.yml
* resolve #224 (#226)
* Update test_stable.yml
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update test_stable.yml (#235)
* Add libgl flag to ci (#238)
* Update linearelasticity_code.ipynb
* Sync file
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update linearelasticity_code.ipynb (#243)
* Improve workflow handling (#118)
* Create common action for all workflows and split them into multiple files
* Dokken/update fspace and wmtgs (#127)
* fix runs-on
* Minor improvements in linearelasticity.md (#124)
* Fix various things on release branch
* Try adding trame
* Revert fundamentals
* Membrane code
* More updates due to autoformatting
* Lagrange -> CG back conversion
* Change to github image
---------
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
* Update petsc arches
* Fix bounding boxes and more (#135)
* Start fixing code for nightly build
* rerun all files
* Try fixing subdomains
* Fix meshio
* PETSc python API update (#137)
* Resolve #136
* Fixes related to: FEniCS/dolfinx#2703
* Update changelog
* Make sure all notebooks run. Change to pathlib in some examples
* Api changes related to: FEniCS/dolfinx#2763 (#142)
* Bump version numbers
* Bump version numbers (#149)
* Fix petsc arch
* Prepare v0.7.1 (#154)
* Merge branch 'main' into release and bump versions
* Delete obsolete file
* Temporary shift path in nightly test
* Make sure there are no warnigns in build
* Tabulation
* Updates compatible with nightly branch of DOLFINx (#156)
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`
* More updates
* And more
* Last vector element updates
* Bump pyvista and dolfinx to v0.7.2 (#159)
* Bump pyvista and dolfinx to v0.7.2
* remove -r
* Add further pyvista deps
* Bump versions
* Update petsc solver and pc links. Resolves #143 (#160)
* Fix typo and issue Issue on page /fem.html #122 (#161)
* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion
* Update backend in workflow
* Fix broken link (#140) + http:// to https:// (#162)
* Run book build prior to parallel run
* Add back write frame
* Fix wrong link
* Fix typo in changelog
* Merge main into release (#189)
* Merge main into release
* Apply suggestions from code review
* Various fixes when reading through the diff
* Further fixes
* add missing checkout (#191)
* add missing checkout
* Add test docker on release PR and release (only push on tag
* Remove unused import
* Update text to resolve #194 (#195)
* Dokken/update nonlin options (#203)
* Update options for non-linear solver to sensible choice, ref #200
* Update docker path
* Update python file as well
* Update config ptr (#207)
* Pressure correction equation fix (#196)
* Update fundamentals.md (#199)
on line 110, updated a typesetting error in equation (3)
* Change from vector to petsc_vec (#206)
* dolfinx.fem.Form changed to dolfinx.fem.form (#213)
* Update compiler_parameters.ipynb
In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.
* jupytext sync
* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem
* Update book_stable.yml
* Update test_stable.yml
* Fix python path in test
* Fix CI (#227)
* Bump docker/build-push-action from 5 to 6 (#221)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)
---
updated-dependencies:
- dependency-name: actions/configure-pages
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update book_stable.yml (#225)
* Update book_stable.yml
* Update test_stable.yml
* resolve #224 (#226)
* Update test_stable.yml
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update test_stable.yml (#235)
* Add libgl flag to ci (#238)
* Update linearelasticity_code.ipynb
* sync
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update ns_code2.ipynb (#241)
* Improve workflow handling (#118)
* Create common action for all workflows and split them into multiple files
* Dokken/update fspace and wmtgs (#127)
* fix runs-on
* Minor improvements in linearelasticity.md (#124)
* Fix various things on release branch
* Try adding trame
* Revert fundamentals
* Membrane code
* More updates due to autoformatting
* Lagrange -> CG back conversion
* Change to github image
---------
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
* Update petsc arches
* Fix bounding boxes and more (#135)
* Start fixing code for nightly build
* rerun all files
* Try fixing subdomains
* Fix meshio
* PETSc python API update (#137)
* Resolve #136
* Fixes related to: FEniCS/dolfinx#2703
* Update changelog
* Make sure all notebooks run. Change to pathlib in some examples
* Api changes related to: FEniCS/dolfinx#2763 (#142)
* Bump version numbers
* Bump version numbers (#149)
* Fix petsc arch
* Prepare v0.7.1 (#154)
* Merge branch 'main' into release and bump versions
* Delete obsolete file
* Temporary shift path in nightly test
* Make sure there are no warnigns in build
* Tabulation
* Updates compatible with nightly branch of DOLFINx (#156)
* Replace VectorElement and FiniteElement with `basix.ufl.element`.
Replace `dolfinx.fem.FunctionSpace` with `dolfinx.fem.functionspace`
* More updates
* And more
* Last vector element updates
* Bump pyvista and dolfinx to v0.7.2 (#159)
* Bump pyvista and dolfinx to v0.7.2
* remove -r
* Add further pyvista deps
* Bump versions
* Update petsc solver and pc links. Resolves #143 (#160)
* Fix typo and issue Issue on page /fem.html #122 (#161)
* Compute entity-cell connectivity before calling locate_dofs_topological.
Remove soon to be deprecated pyvista syntax for updating time dependent fields.
Fix range->np.arange conversion
* Update backend in workflow
* Fix broken link (#140) + http:// to https:// (#162)
* Run book build prior to parallel run
* Add back write frame
* Fix wrong link
* Fix typo in changelog
* Merge main into release (#189)
* Merge main into release
* Apply suggestions from code review
* Various fixes when reading through the diff
* Further fixes
* add missing checkout (#191)
* add missing checkout
* Add test docker on release PR and release (only push on tag
* Remove unused import
* Update text to resolve #194 (#195)
* Dokken/update nonlin options (#203)
* Update options for non-linear solver to sensible choice, ref #200
* Update docker path
* Update python file as well
* Update config ptr (#207)
* Pressure correction equation fix (#196)
* Update fundamentals.md (#199)
on line 110, updated a typesetting error in equation (3)
* Change from vector to petsc_vec (#206)
* dolfinx.fem.Form changed to dolfinx.fem.form (#213)
* Update compiler_parameters.ipynb
In the text it was mentioned that `dolfinx.fem.Form` was used to compile the form, instead of `dolfinx.fem.form`. Not matching the code cell.
* jupytext sync
* Form -> form in both py and ipynb and LinearProblem -> fem.petsc.LinearProblem
* Update book_stable.yml
* Update test_stable.yml
* Fix python path in test
* Fix CI (#227)
* Bump docker/build-push-action from 5 to 6 (#221)
Bumps [docker/build-push-action](https://github.com/docker/build-push-action) from 5 to 6.
- [Release notes](https://github.com/docker/build-push-action/releases)
- [Commits](docker/build-push-action@v5...v6)
---
updated-dependencies:
- dependency-name: docker/build-push-action
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Bump actions/configure-pages from 4 to 5 (#222)
Bumps [actions/configure-pages](https://github.com/actions/configure-pages) from 4 to 5.
- [Release notes](https://github.com/actions/configure-pages/releases)
- [Commits](actions/configure-pages@v4...v5)
---
updated-dependencies:
- dependency-name: actions/configure-pages
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update book_stable.yml (#225)
* Update book_stable.yml
* Update test_stable.yml
* resolve #224 (#226)
* Update test_stable.yml
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update test_stable.yml (#235)
* Add libgl flag to ci (#238)
* Update ns_code2.ipynb
* Update ns code
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Jørgen Schartum Dokken <dokken92@gmail.com>
Co-authored-by: Jørgen S. Dokken <dokken@simula.no>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Add files via upload (#250)
* Remove dead link
* Add fix from #253 + some other typs in that text. (#256)
* Add propsoed solution to #205 (#257)
* Add singular Poisson demo. Resolves: #139 (#263)
* Add extra note on conversion from new python files (#265)
* Adaptive mesh refinement with NetGen (#266)
* Add amr demo
* Update CI
* Update pyproject.toml
* Simplify dockerfile as vtk is now on pypi on linux arch
* Fix indent
* Make netgen optional as it is not on pypi on linux/arm
* Build netgen from source
* Add netgen to stable book build (#267)
* Update text to reflect that there is a docker image (#268)
* Strip output and adapt eta definition, ref comment from Jack Hale (#269)
* Finish trailing sentence (#270)
* Try removing xvfb for most tutorials (#278)
* Try removing xvfb for most tutorials
* INstall osmesa
* Remove -W
* Add offscreen false to jupyter build
* Remove some more xvfb and move new variables
* Lower bound on vtk
* Change tag on release branch
* Another rename
---------
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: Julius Herb <43179176+juliusgh@users.noreply.github.com>
Co-authored-by: rossbm1 <120818149+rossbm1@users.noreply.github.com>
Co-authored-by: Manuel Pena <mpena991@gmail.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: mleoni-pf <160495781+mleoni-pf@users.noreply.github.com>
Co-authored-by: Antonio Baiano Svizzero <107617271+bayswiss@users.noreply.github.com>1 parent 84ef93b commit 287154d
File tree
7 files changed
+23
-14
lines changed- .github
- actions/install-dependencies
- workflows
- chapter4
- docker
7 files changed
+23
-14
lines changed| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
| |||
6 | 6 | | |
7 | 7 | | |
8 | 8 | | |
9 | | - | |
| 9 | + | |
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
| |||
20 | 20 | | |
21 | 21 | | |
22 | 22 | | |
23 | | - | |
| 23 | + | |
24 | 24 | | |
25 | 25 | | |
26 | 26 | | |
| |||
34 | 34 | | |
35 | 35 | | |
36 | 36 | | |
37 | | - | |
| 37 | + | |
38 | 38 | | |
39 | 39 | | |
40 | 40 | | |
| |||
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
| |||
5 | 5 | | |
6 | 6 | | |
7 | 7 | | |
8 | | - | |
9 | | - | |
10 | | - | |
11 | | - | |
12 | | - | |
13 | | - | |
14 | 8 | | |
15 | 9 | | |
16 | 10 | | |
17 | 11 | | |
18 | 12 | | |
19 | 13 | | |
| 14 | + | |
| 15 | + | |
| 16 | + | |
20 | 17 | | |
| 18 | + | |
| 19 | + | |
21 | 20 | | |
22 | 21 | | |
23 | 22 | | |
| |||
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
| |||
1 | | - | |
| 1 | + | |
2 | 2 | | |
3 | 3 | | |
4 | 4 | | |
| |||
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
| |||
82 | 82 | | |
83 | 83 | | |
84 | 84 | | |
85 | | - | |
| 85 | + | |
| 86 | + | |
86 | 87 | | |
87 | 88 | | |
88 | 89 | | |
| |||
100 | 101 | | |
101 | 102 | | |
102 | 103 | | |
103 | | - | |
| 104 | + | |
| 105 | + | |
| 106 | + | |
104 | 107 | | |
105 | 108 | | |
106 | 109 | | |
| |||
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
| |||
64 | 64 | | |
65 | 65 | | |
66 | 66 | | |
67 | | - | |
| 67 | + | |
| 68 | + | |
68 | 69 | | |
69 | 70 | | |
70 | 71 | | |
71 | | - | |
| 72 | + | |
| 73 | + | |
| 74 | + | |
72 | 75 | | |
73 | 76 | | |
74 | 77 | | |
| |||
| Original file line number | Diff line number | Diff line change | |
|---|---|---|---|
| |||
47 | 47 | | |
48 | 48 | | |
49 | 49 | | |
| 50 | + | |
| 51 | + | |
| 52 | + | |
| 53 | + | |
50 | 54 | | |
0 commit comments