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Description
When running PPML with clustered standard errors via nlreg(..., Poission(), LogLink(), GLFixedEffectModels.Vcov.cluster(:xyz)), I occasionally get a new error: ERROR: ArgumentError: matrix contains Infs or NaNs. This error did not appear when running the same code a few months back. The underlying dataset itself contains no Inf or NaN entries.
Is this a known issue? Any hints very much appreciated! I am also happy to provide a MWE with the underlying data if helpful. Full error message below.
I am using Julia v1.9.2 on Mac OS X 14.4.1. I am also posting my ] status below.
Thank you!
[ Info: 888 observations detected as singletons. Dropping them ...
ERROR: ArgumentError: matrix contains Infs or NaNs
Stacktrace:
[1] chkuplofinite(A::Matrix{Float64}, uplo::Char)
@ LinearAlgebra.LAPACK ~/.julia/juliaup/julia-1.9.2+0.x64.apple.darwin14/share/julia/stdlib/v1.9/LinearAlgebra/src/lapack.jl:98
[2] syevr!(jobz::Char, range::Char, uplo::Char, A::Matrix{Float64}, vl::Float64, vu::Float64, il::Int64, iu::Int64, abstol::Float64)
@ LinearAlgebra.LAPACK ~/.julia/juliaup/julia-1.9.2+0.x64.apple.darwin14/share/julia/stdlib/v1.9/LinearAlgebra/src/lapack.jl:5082
[3] #eigen!#204
@ ~/.julia/juliaup/julia-1.9.2+0.x64.apple.darwin14/share/julia/stdlib/v1.9/LinearAlgebra/src/symmetriceigen.jl:8 [inlined]
[4] eigen!
@ ~/.julia/juliaup/julia-1.9.2+0.x64.apple.darwin14/share/julia/stdlib/v1.9/LinearAlgebra/src/symmetriceigen.jl:8 [inlined]
[5] eigen(A::Symmetric{Float64, Matrix{Float64}}; sortby::Nothing)
@ LinearAlgebra ~/.julia/juliaup/julia-1.9.2+0.x64.apple.darwin14/share/julia/stdlib/v1.9/LinearAlgebra/src/symmetriceigen.jl:13
[6] eigen
@ ~/.julia/juliaup/julia-1.9.2+0.x64.apple.darwin14/share/julia/stdlib/v1.9/LinearAlgebra/src/symmetriceigen.jl:11 [inlined]
[7] pinvertible(A::Symmetric{Float64, Matrix{Float64}}, tol::Float64)
@ Vcov ~/.julia/packages/Vcov/MUQ52/src/utils.jl:2
[8] pinvertible
@ ~/.julia/packages/Vcov/MUQ52/src/utils.jl:2 [inlined]
[9] vcov(x::GLFixedEffectModels.VcovDataGLM{Cholesky{Float64, Matrix{Float64}}, Matrix{Float64}, 1}, v::Vcov.ClusterCovariance)
@ GLFixedEffectModels ~/.julia/packages/GLFixedEffectModels/EYMkw/src/utils/vcov.jl:29
[10] nlreg(df::Any, formula::FormulaTerm, distribution::Poisson{Float64}, link::LogLink, vcov::CovarianceEstimator; weights::Union{Nothing, Symbol}, subset::Union{Nothing, AbstractVector}, start::Union{Nothing, AbstractVector}, maxiter_center::Int64, maxiter::Int64, contrasts::Dict{Symbol, Any}, dof_add::Int64, save::Vector{Symbol}, method::Symbol, drop_singletons::Bool, double_precision::Bool, dev_tol::Float64, rho_tol::Float64, step_tol::Float64, center_tol::Float64, separation::Vector{Symbol}, separation_mu_lbound::Float64, separation_mu_ubound::Float64, separation_ReLU_tol::Float64, separation_ReLU_maxiter::Int64, vcovformula::Union{Nothing, Expr, Symbol}, subsetformula::Union{Nothing, Expr, Symbol}, verbose::Bool)
@ GLFixedEffectModels ~/.julia/packages/GLFixedEffectModels/EYMkw/src/fit.jl:553
[11] nlreg
@ ~/.julia/packages/GLFixedEffectModels/EYMkw/src/fit.jl:40 [inlined]
] status
[69666777] Arrow v2.7.2
[6e4b80f9] BenchmarkTools v1.5.0
[deae81f5] Binscatters v0.2.2
[336ed68f] CSV v0.10.14
[861a8166] Combinatorics v1.0.2
[a93c6f00] DataFrames v1.6.1
[1313f7d8] DataFramesMeta v0.15.2
[8bb1440f] DelimitedFiles v1.9.1
[31c24e10] Distributions v0.25.109
[26cc04aa] FiniteDifferences v0.12.32
[9d5cd8c9] FixedEffectModels v1.11.0
[c8885935] FixedEffects v2.4.0
[197bc772] FloatingTableView v0.2.0
[59287772] Formatting v0.4.3
[da1fdf0e] FreqTables v0.4.6
[bafb0ae5] GLFixedEffectModels v0.5.4
[38e38edf] GLM v1.9.0
[a7eae07c] GMMTools v0.1.0 `https://github.com/Gkreindler/GMMTools.jl#cmd`
[033835bb] JLD2 v0.4.48
[682c06a0] JSON v0.21.4
[d3d80556] LineSearches v7.2.0
[e1d29d7a] Missings v1.2.0
[86f7a689] NamedArrays v0.10.2
[429524aa] Optim v1.9.4
[626c502c] Parquet v0.8.4
[91a5bcdd] Plots v1.40.4
[8162dcfd] PrettyPrint v0.2.0
[ce6b1742] RDatasets v0.7.7
[d519eb52] RegressionTables v0.7.5
[295af30f] Revise v3.5.14
[f2b01f46] Roots v2.1.5
[1463e38c] StatFiles v0.8.0
[2913bbd2] StatsBase v0.34.3
[3eaba693] StatsModels v0.7.3
[40c74d1a] TableView v0.7.2
[a759f4b9] TimerOutputs v0.5.24
[770da0de] UpdateJulia v0.4.4
[9a3f8284] Random
[10745b16] Statistics v1.9.0
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