Add existing file

Author: jithin8mathew

MANIFEST.in

@@ -1 +1,6 @@
+include *.in
 include *.txt
+recursive-include discere/features/ *
+recursive-include discere *.py
+graft preprocessing 
+graft features

discere/discere.py

@@ -3,13 +3,6 @@
 from discere.features import feature_extraction
 system = sys.platform
 
-# def feat_ext():
-# 	print("Extracting features....")
-# 	if system == 'linux':
-# 		subprocess.run(['python3','feature_extraction.py'])
-# 	else:
-# 		subprocess.run(['python.exe','process_fasta.py'])
-
 def extract_feature(positive, negative, outdir):
 	code = process_fasta.process_fasta(positive, negative, outdir)
 	if code is True:

discere/features/feature_extraction.py

@@ -17,7 +17,6 @@ def feature_extraction(outdir=os.getcwd()):
 	seq_list, cls_list=data['sequence'].tolist(), data['class'].tolist() # get the sequence and class to lists
 
 	pth=path_+'/output/'
-	print(pth)
 	if not os.path.exists(pth):os.makedirs(pth)
 
 	#try:[os.remove(filenames[0]+x) for filenames in os.walk(pth) for x in (filenames[2])]		# remove the file if already exist
@@ -27,7 +26,6 @@ def feature_extraction(outdir=os.getcwd()):
 	attr=open(filepath,"rb")
 
 	attr=pickle.load(attr)		# load the pickle file with attribue names (for weka)
-	print(attr)
 	with open(pth+"/weka_output.arff","a+") as wk: wk.write("".join('{}\n'.format(x) for x in attr))
 
 	def format_output(aa_count,cnt):				 # write the extracted feature values to arff (weka), txt(svm) and csv file