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Merge pull request #53 from jajupmochi/v0.2.x
V0.2.x
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‎.github/workflows/github-actions-centos.yml_tmp‎

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name: graphkit-learn
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run-name: ${{ github.actor }} is testing graphkit-learn out GitHub Actions 🚀
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on: [ push, pull_request ]
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jobs:
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CI-CentOS:
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: [ "3.8.6" ] # , "3.9", "3.10" ]
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container: [ "centos:latest" ] # [ "centos:7" ]
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container:
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image: ${{ matrix.container }}
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steps:
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- run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
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- run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
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- run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
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- name: Check out repository code
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uses: actions/checkout@v3
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- run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
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- run: echo "🖥️ The workflow is now ready to test your code on the runner."
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- run: echo "🪵 The root directory of the checked-out repository is:"
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- run: echo $GITHUB_WORKSPACE
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- name: List files in the repository
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run: |
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pwd
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ls /
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printf "\nThe files contained in the repository (GITHUB_WORKSPACE):\n"
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ls $GITHUB_WORKSPACE
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- run: echo "🍏 This job's status is ${{ job.status }}."
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- name: Install Python
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run: |
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yum -y install python38
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# - name: Install system-level dependencies
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# run: |
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# #%% lsb-core is required for actions/setup-python@v4:
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# printf "\nInstalling redhat-lsb-core:\n"
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# yum install -y redhat-lsb-core
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# printf "\n"
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# printf "\nInstalling dependencies for installing make and glibc:\n"
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# yum install -y git gcc make wget which alias
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# - name: Upgrade make for installing glibc
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# run: |
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# #%% Install a higher version of make: (The latest version on CentOS 7
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# #%% is 3.82.)
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# # Determine the current version of make that is installed:
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# printf "\nCurrent version of make installed:\n"
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# rpm -q make
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# printf "\n"
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# # Check if a newer version of make is available in the official CentOS
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# # repositories:
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# printf "\nThe latest version of make available on the current system:\n"
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# yum list make
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# printf "\n"
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# printf "\nInstalling make 4.4 from source:\n"
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# cd $HOME
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# mkdir -p softwares
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# cd softwares
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# echo "Current work directory:"
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# pwd
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# wget --no-check-certificate https://ftp.gnu.org/gnu/make/make-4.4.tar.gz
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# tar -xzvf make-4.4.tar.gz
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# cd make-4.4
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# ./configure --prefix=$HOME/installed/make-4.4
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# make && make install
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# echo 'export PATH=$HOME/installed/make-4.4/bin:$PATH' >> ~/.bashrc
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# source ~/.bashrc
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# echo "Current PATH:"
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# echo $PATH
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# printf "\n"
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# # Verify that make has been installed:
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# printf "\nThe new version of make installed:\n"
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# rpm -q make
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# which make
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# alias
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# ls -l $(which make)
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# printf "\n"
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# printf "\ncd back:\n"
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# cd $GITHUB_WORKSPACE
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# echo "Current work directory:"
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# pwd
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# - name: Upgrade gcc for installing glibc
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# run: |
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# #%% Install a higher version of gcc: (The latest version on CentOS 7
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# #%% is 4.8.5.)
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# # Determine the current version of gcc that is installed:
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# printf "\nCurrent version of gcc installed:\n"
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# rpm -q gcc
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# printf "\n"
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# # Check if a newer version of gcc is available in the official CentOS
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# # repositories:
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# printf "\nThe latest version of gcc available on the current system:\n"
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# yum list gcc
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# printf "\n"
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# printf "\nInstalling the required dependencies for installing gcc:\n"
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# yum install -y bzip2 gcc-c++ gmp-devel mpfr-devel libmpc-devel
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# printf "\n"
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# printf "\nInstalling the latest version of gcc from source:\n"
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# cd $HOME/
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# mkdir -p softwares
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# cd softwares
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# echo "Current work directory:"
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# pwd
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# wget --no-check-certificate https://ftp.gnu.org/gnu/gcc/gcc-7.4.0/gcc-7.4.0.tar.gz
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# tar -xzvf gcc-7.4.0.tar.gz
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# cd gcc-7.4.0
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# # ./contrib/download_prerequisites # Solve the gmp, mpfr, mpc problems.
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# mkdir build
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# cd build
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# ../configure --prefix=$HOME/installed/gcc-7.4.0 -enable-languages=c,c++ -disable-multilib
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# make -j$(nproc)
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# make install
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# export PATH=$HOME/installed/gcc-7.4.0/bin:$PATH
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# export LD_LIBRARY_PATH=$HOME/installed/gcc-7.4.0/lib64:$HOME/installed/gcc-7.4.0/lib:$LD_LIBRARY_PATH
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# export LIBRARY_PATH=$HOME/installed/gcc-7.4.0/lib64:$HOME/installed/gcc-7.4.0/lib:$LIBRARY_PATH
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# printf "\n"
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# # Verify that gcc has been installed:
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# printf "\nThe new version of gcc installed:\n"
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# rpm -q gcc
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# gcc -v
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# which gcc
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# ls -l $(which gcc)
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# printf "\n"
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# printf "\ncd back:\n"
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# cd $GITHUB_WORKSPACE
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# echo "Current work directory:"
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# pwd
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#
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# - name: Upgrade glibc
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# run: |
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# #%% Install a higher version of glibc: (The latest version on CentOS 7
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# #%% is 2.17, while at least 2.27 is required for the latest Python 3.8.)
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# # Determine the current version of glibc that is installed:
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# printf "\nCurrent version of glibc installed:\n"
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# rpm -q glibc
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# printf "\n"
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# # Check if a newer version of glibc is available in the official CentOS
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# # repositories:
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# printf "\nThe latest version of glibc available on the current system:\n"
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# yum list glibc
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# printf "\n"
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# printf "\nInstalling the required dependencies for installing glibc:\n"
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# yum install -y bison flex gawk gettext-devel texinfo
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# printf "\n"
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# printf "\nInstalling the latest version of glibc from source:\n"
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# cd $HOME/
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# mkdir -p softwares
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# cd softwares
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# echo "Current work directory:"
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# pwd
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# wget --no-check-certificate https://ftp.gnu.org/gnu/glibc/glibc-2.27.tar.gz
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# tar -xzvf glibc-2.27.tar.gz
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# # git clone https://sourceware.org/git/glibc.git
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# cd glibc-2.27
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# # git checkout master
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# mkdir build
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# cd build
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# ../configure --prefix=$HOME/installed/glibc-2.27
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# # ../configure --prefix=$HOME/installed/glibc-latest
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# make
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# make install
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# export LD_LIBRARY_PATH=$HOME/installed/glibc-2.27/lib:$LD_LIBRARY_PATH
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# # export LD_LIBRARY_PATH=$HOME/installed/glibc-latest/lib:$LD_LIBRARY_PATH
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# printf "\n"
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# # Verify that glibc has been installed:
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# printf "\nThe new version of glibc installed:\n"
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# rpm -q glibc
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# printf "\n"
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# printf "\ncd back:\n"
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# cd $GITHUB_WORKSPACE
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# echo "Current work directory:"
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# pwd
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v4
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with:
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python-version: '/usr/local/bin/python3.8'
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# python-version: ${{ matrix.python-version }}
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# cache: 'pip' # caching pip dependencies
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- name: Check installed Python and pip
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run: |
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python --version
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pip --version
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find / -name pip 2>/dev/null
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install Cython pytest
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pip install codecov coverage pytest-cov
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sudo apt-get -y install gfortran liblapack-dev
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pip install -r requirements.txt
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pip install wheel
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- name: Build and test
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run: |
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python setup.py bdist_wheel
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pytest -v --cov-config=.coveragerc --cov-report term --cov=gklearn gklearn/tests/ged/
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# pytest -v --cov-config=.coveragerc --cov-report term --cov=gklearn gklearn/tests/ --ignore=gklearn/tests/test_median_preimage_generator.py --ignore=gklearn/tests/test_graphkernels.py
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- name: Run code coverage
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run: |
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codecov
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# - name: Publish distribution 📦 to Test PyPI
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# if: matrix.python-version == '3.8' && matrix.os == 'ubuntu-latest'
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# uses: pypa/gh-action-pypi-publish@release/v1
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# with:
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# password: ${{ secrets.TEST_PYPI_API_TOKEN }}
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# repository-url: https://test.pypi.org/legacy/
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#
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# - name: Publish distribution 📦 to PyPI
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# if: matrix.python-version == '3.8' && matrix.os == 'ubuntu-latest'
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# uses: pypa/gh-action-pypi-publish@release/v1
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# with:
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# user: __token__
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# password: ${{ secrets.PYPI_API_TOKEN }}

‎.github/workflows/github-actions-ubuntu.yml‎

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#name: he
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#
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#on:
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# push:
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# branches: [main]
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# pull_request:
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# branches: [main]
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#
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#jobs:
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# build:
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#
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# runs-on: ${{ matrix.os }}
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#
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# strategy:
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# matrix:
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# os: [ubuntu-latest, macos-latest, windows-latest]
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# python-version: [3.6, 3.7, 3.8, 3.9]
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#
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# steps:
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# - uses: actions/checkout@v2
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#
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# - name: Set up Python ${{ matrix.python-version }}
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# uses: actions/setup-python@v2
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# with:
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# python-version: ${{ matrix.python-version }}
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#
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# - name: Install dependencies
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# run: |
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# python -m pip install --upgrade pip
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# pip install Cython pytest
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#
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# - name: Build and test
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# run: |
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# python setup.py build_ext --inplace
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# pytest
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name: graphkit-learn
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run-name: ${{ github.actor }} is testing graphkit-learn out GitHub Actions 🚀
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on: [ push, pull_request ]
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jobs:
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CI-Ubuntu:
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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# os: [ubuntu-latest, macos-latest, windows-latest]
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os: [ubuntu-latest]
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python-version: ["3.8", "3.9", "3.10"]
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steps:
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- run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event."
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- run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by GitHub!"
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- run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}."
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- name: Check out repository code
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uses: actions/checkout@v3
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- run: echo "💡 The ${{ github.repository }} repository has been cloned to the runner."
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- run: echo "🖥️ The workflow is now ready to test your code on the runner."
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- run: echo "🪵 The root directory of the file system is ${{ github.workspace }}."
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- name: List files in the repository
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run: |
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pwd
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ls /
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echo "The files contained in the repository (github.workspace):"
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ls ${{ github.workspace }}
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- run: echo "🍏 This job's status is ${{ job.status }}."
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v4
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with:
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python-version: ${{ matrix.python-version }}
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cache: 'pip' # caching pip dependencies
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- name: Install dependencies
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run: |
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python -m pip install --upgrade pip
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pip install Cython pytest
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pip install codecov coverage pytest-cov
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sudo apt-get -y install gfortran liblapack-dev
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pip install -r requirements.txt
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pip install wheel
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- name: Build and test
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run: |
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# python setup.py bdist_wheel
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python setup.py install
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# pytest -v --cov-config=.coveragerc --cov-report term --cov=gklearn gklearn/tests/ged/
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pytest -v --cov-config=.coveragerc --cov-report term --cov=gklearn gklearn/tests/ --ignore=gklearn/tests/test_median_preimage_generator.py --ignore=gklearn/tests/test_graphkernels.py
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- name: Run code coverage
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run: |
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codecov
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- name: Publish distribution 📦 to Test PyPI
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if: matrix.python-version == '3.8' && matrix.os == 'ubuntu-latest'
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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password: ${{ secrets.TEST_PYPI_API_TOKEN }}
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repository-url: https://test.pypi.org/legacy/
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- name: Publish distribution 📦 to PyPI
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if: matrix.python-version == '3.8' && matrix.os == 'ubuntu-latest'
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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user: __token__
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password: ${{ secrets.PYPI_API_TOKEN }}

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