Merge pull request #98 from holgerteichgraeber/testing

Testing + code coverage
- Addresses #91 
- connection to codecov.io : https://codecov.io/gh/holgerteichgraeber/ClustForOpt.jl .
- cleanup of some unused functions
- replaced `@error` by `error(msg)`. The former is used for logging, whereas the later throws an Exception. We want the latter.

Author: holgerteichgraeber

.codecov.yml

@@ -0,0 +1,29 @@
+codecov:
+  notify:
+    require_ci_to_pass: yes
+
+coverage:
+  precision: 2
+  round: down
+  range: "70...100"
+
+  status:
+    project: yes
+    patch: yes
+    changes: no
+
+parsers:
+  gcov:
+    branch_detection:
+      conditional: yes
+      loop: yes
+      method: no
+      macro: no
+
+comment:
+  layout: "header, diff"
+  behavior: default
+  require_changes: no
+
+ignore:
+  - "src/clustering/shape_based/*"

.travis.yml

@@ -9,23 +9,22 @@ julia:
 notifications:
   email: false
 
-after_success:
-
 jobs:
   include:
     - stage: "Testing"
       julia: 1.0
       os: linux
       script:
         - julia --project=test/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
-        - julia --project=test/ test/clustering.jl
-        - julia --project=test/ test/test_workflow_introduction.jl
-      after_success:
+        - julia --project=test/ --code-coverage test/runtests.jl 
     - stage: "Documentation"
       julia: 1.0
       os: linux
       script:
         - julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
         - julia --project=docs/ docs/make.jl
-      after_success:
-services: docker
+      after_success: skip
+
+after_success:
+    - julia -e 'using Pkg; Pkg.add("Coverage")'
+    - julia -e 'using Coverage; Codecov.submit(process_folder())'

Manifest.toml

@@ -12,11 +12,21 @@ Clustering = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
 FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
-JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
 JuMP = "4076af6c-e467-56ae-b986-b466b2749572"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 
 [compat]
 julia = "^1.0"
+
+[extras]
+Cbc = "9961bab8-2fa3-5c5a-9d89-47fab24efd76"
+JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
+Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
+StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
+Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+
+[targets]
+test = ["Pkg", "Test", "StatsBase", "Cbc", "Random", "JLD2"]