Merge pull request #12 from gjbex/development

Minor updates

Author: gjbex

environment.yml

@@ -3,70 +3,216 @@ channels:
   - defaults
 dependencies:
   - _libgcc_mutex=0.1=main
-  - argon2-cffi=20.1.0=py37h7b6447c_1
-  - attrs=19.3.0=py_0
-  - backcall=0.2.0=py_0
+  - _openmp_mutex=4.5=1_gnu
+  - anyio=2.2.0=py37h06a4308_1
+  - argcomplete=1.12.3=pyhd3eb1b0_0
+  - argon2-cffi=20.1.0=py37h27cfd23_1
+  - async_generator=1.10=py37h28b3542_0
+  - attrs=21.2.0=pyhd3eb1b0_0
+  - babel=2.9.1=pyhd3eb1b0_0
+  - backcall=0.2.0=pyhd3eb1b0_0
   - blas=1.0=mkl
-  - bleach=3.1.5=py_0
-  - blosc=1.19.0=hd408876_0
-  - bokeh=2.1.1=py37_0
-  - brotlipy=0.7.0=py37h7b6447c_1000
+  - bleach=4.0.0=pyhd3eb1b0_0
+  - blosc=1.21.0=h8c45485_0
+  - bokeh=2.4.2=py37h06a4308_0
+  - bottleneck=1.3.2=py37heb32a55_1
+  - brotli=1.0.9=he6710b0_2
+  - brotlipy=0.7.0=py37h27cfd23_1003
+  - brunsli=0.1=h2531618_0
   - bzip2=1.0.8=h7b6447c_0
-  - ca-certificates=2020.6.24=0
-  - cairo=1.14.12=h8948797_3
-  - certifi=2020.6.20=py37_0
-  - cffi=1.14.1=py37he30daa8_0
-  - chardet=3.0.4=py37_1003
-  - cloudpickle=1.5.0=py_0
-  - cryptography=2.9.2=py37h1ba5d50_0
-  - cycler=0.10.0=py37_0
-  - cytoolz=0.10.1=py37h7b6447c_0
-  - dask-core=2.22.0=py_0
-  - dbus=1.13.16=hb2f20db_0
-  - decorator=4.4.2=py_0
-  - defusedxml=0.6.0=py_0
+  - c-ares=1.17.1=h27cfd23_0
+  - ca-certificates=2021.10.26=h06a4308_2
+  - cairo=1.16.0=hf32fb01_1
+  - certifi=2021.10.8=py37h06a4308_0
+  - cffi=1.14.6=py37h400218f_0
+  - cfitsio=3.470=hf0d0db6_6
+  - chardet=4.0.0=py37h06a4308_1003
+  - charls=2.2.0=h2531618_0
+  - charset-normalizer=2.0.4=pyhd3eb1b0_0
+  - cloudpickle=2.0.0=pyhd3eb1b0_0
+  - cryptography=35.0.0=py37hd23ed53_0
+  - cycler=0.11.0=pyhd3eb1b0_0
+  - cytoolz=0.11.0=py37h7b6447c_0
+  - dask-core=2021.10.0=pyhd3eb1b0_0
+  - dbus=1.13.18=hb2f20db_0
+  - debugpy=1.5.1=py37h295c915_0
+  - decorator=5.1.0=pyhd3eb1b0_0
+  - defusedxml=0.7.1=pyhd3eb1b0_0
   - entrypoints=0.3=py37_0
-  - expat=2.2.9=he6710b0_2
+  - expat=2.4.1=h2531618_2
   - fastcache=1.1.0=py37h7b6447c_0
   - ffmpeg=4.0=hcdf2ecd_0
-  - fontconfig=2.13.0=h9420a91_0
+  - fontconfig=2.13.1=h6c09931_0
+  - fonttools=4.25.0=pyhd3eb1b0_0
   - freeglut=3.0.0=hf484d3e_5
-  - freetype=2.10.2=h5ab3b9f_0
-  - glib=2.65.0=h3eb4bd4_0
-  - gmp=6.1.2=h6c8ec71_1
+  - freetype=2.11.0=h70c0345_0
+  - fsspec=2021.10.1=pyhd3eb1b0_0
+  - giflib=5.2.1=h7b6447c_0
+  - glib=2.69.1=h5202010_0
+  - gmp=6.2.1=h2531618_2
   - gmpy2=2.0.8=py37h10f8cd9_2
   - graphite2=1.3.14=h23475e2_0
-  - gst-plugins-base=1.14.0=hbbd80ab_1
-  - gstreamer=1.14.0=hb31296c_0
+  - gst-plugins-base=1.14.0=h8213a91_2
+  - gstreamer=1.14.0=h28cd5cc_2
   - harfbuzz=1.8.8=hffaf4a1_0
   - hdf5=1.10.2=hba1933b_1
   - icu=58.2=he6710b0_3
-  - idna=2.10=py_0
-  - imageio=2.9.0=py_0
-  - importlib-metadata=1.7.0=py37_0
-  - importlib_metadata=1.7.0=0
-  - intel-openmp=2020.1=217
-  - ipykernel=5.3.4=py37h5ca1d4c_0
-  - ipython=7.17.0=py37h39e3cac_0
-  - ipython_genutils=0.2.0=py37_0
-  - ipywidgets=7.5.1=py_0
-  - jasper=2.0.14=h07fcdf6_1
-  - jedi=0.15.1=py37_0
-  - jinja2=2.11.2=py_0
-  - jpeg=9b=h024ee3a_2
-  - json5=0.9.5=py_0
-  - jsonschema=3.2.0=py37_1
+  - idna=3.3=pyhd3eb1b0_0
+  - imagecodecs=2021.8.26=py37h4cda21f_0
+  - imageio=2.9.0=pyhd3eb1b0_0
+  - importlib-metadata=4.8.2=py37h06a4308_0
+  - importlib_metadata=4.8.2=hd3eb1b0_0
+  - intel-openmp=2021.4.0=h06a4308_3561
+  - ipykernel=6.4.1=py37h06a4308_1
+  - ipython=7.29.0=py37hb070fc8_0
+  - ipython_genutils=0.2.0=pyhd3eb1b0_1
+  - ipywidgets=7.6.5=pyhd3eb1b0_1
+  - jasper=2.0.14=hd8c5072_2
+  - jedi=0.18.0=py37h06a4308_1
+  - jinja2=3.0.2=pyhd3eb1b0_0
+  - jpeg=9d=h7f8727e_0
+  - json5=0.9.6=pyhd3eb1b0_0
+  - jsonschema=3.2.0=pyhd3eb1b0_2
   - jupyter=1.0.0=py37_7
-  - jupyter_client=6.1.6=py_0
-  - jupyter_console=6.1.0=py_0
-  - jupyter_core=4.6.3=py37_0
-  - jupyterlab=2.1.5=py_0
-  - jupyterlab_server=1.2.0=py_0
-  - kiwisolver=1.2.0=py37hfd86e86_0
-  - lcms2=2.11=h396b838_0
-  - ld_impl_linux-64=2.33.1=h53a641e_7
-  - libedit=3.1.20191231=h14c3975_1
+  - jupyter_client=7.0.6=pyhd3eb1b0_0
+  - jupyter_console=6.4.0=pyhd3eb1b0_0
+  - jupyter_core=4.9.1=py37h06a4308_0
+  - jupyter_server=1.4.1=py37h06a4308_0
+  - jupyterlab=3.2.1=pyhd3eb1b0_1
+  - jupyterlab_pygments=0.1.2=py_0
+  - jupyterlab_server=2.8.2=pyhd3eb1b0_0
+  - jupyterlab_widgets=1.0.0=pyhd3eb1b0_1
+  - jxrlib=1.1=h7b6447c_2
+  - kiwisolver=1.3.1=py37h2531618_0
+  - krb5=1.19.2=hac12032_0
+  - lcms2=2.12=h3be6417_0
+  - ld_impl_linux-64=2.35.1=h7274673_9
+  - lerc=3.0=h295c915_0
+  - libaec=1.0.4=he6710b0_1
+  - libcurl=7.80.0=h0b77cf5_0
+  - libdeflate=1.8=h7f8727e_5
+  - libedit=3.1.20210910=h7f8727e_0
+  - libev=4.33=h7f8727e_1
   - libffi=3.3=he6710b0_2
-  - libgcc-ng=9.1.0=hdf63c60_0
-  - libgfortran-ng=7.3.0=hdf63c60_0
+  - libgcc-ng=9.3.0=h5101ec6_17
+  - libgfortran-ng=7.5.0=ha8ba4b0_17
+  - libgfortran4=7.5.0=ha8ba4b0_17
   - libglu=9.0.0=hf484d3e_1
+  - libgomp=9.3.0=h5101ec6_17
+  - libnghttp2=1.46.0=hce63b2e_0
+  - libopencv=3.4.2=hb342d67_1
+  - libopus=1.3.1=h7b6447c_0
+  - libpng=1.6.37=hbc83047_0
+  - libsodium=1.0.18=h7b6447c_0
+  - libssh2=1.9.0=h1ba5d50_1
+  - libstdcxx-ng=9.3.0=hd4cf53a_17
+  - libtiff=4.2.0=h85742a9_0
+  - libuuid=1.0.3=h7f8727e_2
+  - libvpx=1.7.0=h439df22_0
+  - libwebp=1.2.0=h89dd481_0
+  - libwebp-base=1.2.0=h27cfd23_0
+  - libxcb=1.14=h7b6447c_0
+  - libxml2=2.9.12=h03d6c58_0
+  - libzopfli=1.0.3=he6710b0_0
+  - locket=0.2.1=py37h06a4308_1
+  - lz4-c=1.9.3=h295c915_1
+  - lzo=2.10=h7b6447c_2
+  - markupsafe=2.0.1=py37h27cfd23_0
+  - matplotlib=3.5.0=py37h06a4308_0
+  - matplotlib-base=3.5.0=py37h3ed280b_0
+  - matplotlib-inline=0.1.2=pyhd3eb1b0_2
+  - mistune=0.8.4=py37h14c3975_1001
+  - mkl=2021.4.0=h06a4308_640
+  - mkl-service=2.4.0=py37h7f8727e_0
+  - mkl_fft=1.3.1=py37hd3c417c_0
+  - mkl_random=1.2.2=py37h51133e4_0
+  - mpc=1.1.0=h10f8cd9_1
+  - mpfr=4.0.2=hb69a4c5_1
+  - mpmath=1.2.1=py37h06a4308_0
+  - munkres=1.1.4=py_0
+  - nbclassic=0.2.6=pyhd3eb1b0_0
+  - nbclient=0.5.3=pyhd3eb1b0_0
+  - nbconvert=6.1.0=py37h06a4308_0
+  - nbformat=5.1.3=pyhd3eb1b0_0
+  - ncurses=6.3=h7f8727e_2
+  - nest-asyncio=1.5.1=pyhd3eb1b0_0
+  - networkx=2.6.3=pyhd3eb1b0_0
+  - nodejs=10.13.0=he6710b0_0
+  - notebook=6.4.6=py37h06a4308_0
+  - numexpr=2.7.3=py37h22e1b3c_1
+  - numpy=1.21.2=py37h20f2e39_0
+  - numpy-base=1.21.2=py37h79a1101_0
+  - olefile=0.46=py37_0
+  - opencv=3.4.2=py37h6fd60c2_1
+  - openjpeg=2.4.0=h3ad879b_0
+  - openssl=1.1.1l=h7f8727e_0
+  - packaging=21.3=pyhd3eb1b0_0
+  - pandas=1.3.4=py37h8c16a72_0
+  - pandoc=2.12=h06a4308_0
+  - pandocfilters=1.4.3=py37h06a4308_1
+  - parso=0.8.2=pyhd3eb1b0_0
+  - partd=1.2.0=pyhd3eb1b0_0
+  - pcre=8.45=h295c915_0
+  - pexpect=4.8.0=pyhd3eb1b0_3
+  - pickleshare=0.7.5=pyhd3eb1b0_1003
+  - pillow=8.4.0=py37h5aabda8_0
+  - pip=21.2.2=py37h06a4308_0
+  - pixman=0.40.0=h7f8727e_1
+  - prometheus_client=0.12.0=pyhd3eb1b0_0
+  - prompt-toolkit=3.0.20=pyhd3eb1b0_0
+  - prompt_toolkit=3.0.20=hd3eb1b0_0
+  - ptyprocess=0.7.0=pyhd3eb1b0_2
+  - py-opencv=3.4.2=py37hb342d67_1
+  - pycparser=2.21=pyhd3eb1b0_0
+  - pygments=2.10.0=pyhd3eb1b0_0
+  - pyopenssl=21.0.0=pyhd3eb1b0_1
+  - pyparsing=3.0.4=pyhd3eb1b0_0
+  - pyqt=5.9.2=py37h05f1152_2
+  - pyrsistent=0.18.0=py37heee7806_0
+  - pysocks=1.7.1=py37_1
+  - pytables=3.4.4=py37ha205bf6_0
+  - python=3.7.11=h12debd9_0
+  - python-dateutil=2.8.2=pyhd3eb1b0_0
+  - pytz=2021.3=pyhd3eb1b0_0
+  - pywavelets=1.1.1=py37h7b6447c_2
+  - pyyaml=6.0=py37h7f8727e_1
+  - pyzmq=22.3.0=py37h295c915_2
+  - qt=5.9.7=h5867ecd_1
+  - qtconsole=5.1.1=pyhd3eb1b0_0
+  - qtpy=1.10.0=pyhd3eb1b0_0
+  - readline=8.1=h27cfd23_0
+  - requests=2.26.0=pyhd3eb1b0_0
+  - scikit-image=0.18.3=py37h51133e4_0
+  - scipy=1.7.1=py37h292c36d_2
+  - send2trash=1.8.0=pyhd3eb1b0_1
+  - setuptools=58.0.4=py37h06a4308_0
+  - sip=4.19.8=py37hf484d3e_0
+  - six=1.16.0=pyhd3eb1b0_0
+  - snappy=1.1.8=he6710b0_0
+  - sniffio=1.2.0=py37h06a4308_1
+  - sqlite=3.36.0=hc218d9a_0
+  - sympy=1.9=py37h06a4308_0
+  - terminado=0.9.4=py37h06a4308_0
+  - testpath=0.5.0=pyhd3eb1b0_0
+  - tifffile=2021.7.2=pyhd3eb1b0_2
+  - tk=8.6.11=h1ccaba5_0
+  - toolz=0.11.2=pyhd3eb1b0_0
+  - tornado=6.1=py37h27cfd23_0
+  - traitlets=5.1.1=pyhd3eb1b0_0
+  - typing-extensions=3.10.0.2=hd3eb1b0_0
+  - typing_extensions=3.10.0.2=pyh06a4308_0
+  - urllib3=1.26.7=pyhd3eb1b0_0
+  - wcwidth=0.2.5=pyhd3eb1b0_0
+  - webencodings=0.5.1=py37_1
+  - wheel=0.37.0=pyhd3eb1b0_1
+  - widgetsnbextension=3.5.1=py37_0
+  - xarray=0.20.1=pyhd3eb1b0_1
+  - xlrd=2.0.1=pyhd3eb1b0_0
+  - xz=5.2.5=h7b6447c_0
+  - yaml=0.2.5=h7b6447c_0
+  - zeromq=4.3.4=h2531618_0
+  - zfp=0.5.5=h2531618_6
+  - zipp=3.6.0=pyhd3eb1b0_0
+  - zlib=1.2.11=h7b6447c_3
+  - zstd=1.4.9=haebb681_0
+prefix: /home/gjb/miniconda3/envs/scientific_python