diff --git a/404.html b/404.html index 8c8965e82..95c3f44b8 100644 --- a/404.html +++ b/404.html @@ -53,7 +53,7 @@ - + @@ -101,7 +101,13 @@ - + + + + @@ -1219,7 +1225,7 @@
  • - + @@ -1472,7 +1478,7 @@
  • - + @@ -3190,5 +3196,61 @@

    404 - Not found

    - + + + \ No newline at end of file diff --git a/AGENTS/index.html b/AGENTS/index.html index 11508dd7c..638ce8768 100644 --- a/AGENTS/index.html +++ b/AGENTS/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -4136,7 +4142,7 @@

    🎯 Core MissionQuick Links

    See: UNIFIED_GRAMMAR_RULES.md for complete derivations

    @@ -4865,7 +4871,7 @@

    Phase Curv - Import from src/tnfr/physics/fields.py - Compute via compute_phase_curvature(G) [CANONICAL] - Optional multiscale check: k_phi_multiscale_safety(G, alpha_hint=2.76)

    -

    Documentation: See benchmarks/K_PHI_RESEARCH_SUMMARY.md and +

    Documentation: See benchmarks/K_PHI_RESEARCH_SUMMARY.md and benchmarks/enhanced_fragmentation_test.py for empirical validation.

    Coherence Length (ξ_C) - CANONICAL ⭐ NEWLY PROMOTED (Nov 2025)

    @@ -4910,7 +4916,7 @@

    Coherence not captured by Ξ¦_s, |βˆ‡Ο†|, or K_Ο†. Enables detection of genuine phase transitions through divergence near critical points. Topology-dependent critical exponents suggest rich universality class structure in TNFR networks.

    -

    Documentation: See docs/XI_C_CANONICAL_PROMOTION.md for complete +

    Documentation: See docs/XI_C_CANONICAL_PROMOTION.md for complete experimental validation, docs/XI_C_BREAKTHROUGH_REPORT.txt for detailed analysis, and benchmarks/results/xi_c_critical_behavior_analysis.png for visualization of critical behavior across topologies.

    @@ -4985,5 +4991,61 @@

    Coherence - + + + \ No newline at end of file diff --git a/API_CONTRACTS/index.html b/API_CONTRACTS/index.html index 782cc5d28..1cc89c9cf 100644 --- a/API_CONTRACTS/index.html +++ b/API_CONTRACTS/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3704,5 +3710,61 @@

    References - + + + \ No newline at end of file diff --git a/ARCHITECTURE/index.html b/ARCHITECTURE/index.html index b18241e9a..761702775 100644 --- a/ARCHITECTURE/index.html +++ b/ARCHITECTURE/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -3824,7 +3830,7 @@

    Unified Canonical Constraints (U1-U

    For complete physics derivations, canonical definitions, and implementation details, see: - UNIFIED_GRAMMAR_RULES.md - Complete mathematical derivations - AGENTS.md Β§ Unified Grammar - Concise reference -- docs/grammar/02-CANONICAL-CONSTRAINTS.md - Technical specification

    +- docs/grammar/02-CANONICAL-CONSTRAINTS.md - Technical specification

    Quick Summary: - U1: STRUCTURAL INITIATION & CLOSURE - Start with generators, end with closures - U2: CONVERGENCE & BOUNDEDNESS - Destabilizers require stabilizers @@ -3839,7 +3845,7 @@

    Migration from Old SystemsGrammar Migration Guide for migration instructions.

    +

    See Grammar Migration Guide for migration instructions.

    Layered responsibilities

    @@ -4258,5 +4264,61 @@

    Direct manipulation (avoid) - + + + \ No newline at end of file diff --git a/CANONICAL_OZ_SEQUENCES/index.html b/CANONICAL_OZ_SEQUENCES/index.html index 91d1a63c4..9a37cd3e1 100644 --- a/CANONICAL_OZ_SEQUENCES/index.html +++ b/CANONICAL_OZ_SEQUENCES/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3634,5 +3640,61 @@

    Summary - + + + \ No newline at end of file diff --git a/CANONICAL_SOURCES/index.html b/CANONICAL_SOURCES/index.html index 7ad66d3ff..3e950dd45 100644 --- a/CANONICAL_SOURCES/index.html +++ b/CANONICAL_SOURCES/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -3509,7 +3515,7 @@

    Tier 1: Ultimate Sources (Ph

    Tier 2: Specialized Documentation (Single Responsibility)

    These documents cover specific aspects in depth. They MAY provide context but MUST reference Tier 1 for canonical definitions.

      -
    1. docs/grammar/02-CANONICAL-CONSTRAINTS.md - U1-U6 technical specification
      2. +
    2. docs/grammar/02-CANONICAL-CONSTRAINTS.md - U1-U6 technical specification
    3. Detailed constraint specifications
    4. Implementation examples
    5. Test requirements
      6. @@ -3517,7 +3523,7 @@

      Tier 2: Speciali

      Must reference: UNIFIED_GRAMMAR_RULES.md for derivations

    6. -

      docs/grammar/U6_STRUCTURAL_POTENTIAL_CONFINEMENT.md - U6 complete specification

      +

      docs/grammar/U6_STRUCTURAL_POTENTIAL_CONFINEMENT.md - U6 complete specification

    7. U6 physics, validation, implementation
    8. @@ -3533,7 +3539,7 @@

      Tier 2: Speciali

      Must reference: AGENTS.md for invariants, operators, grammar

    9. -

      TESTING.md - Test strategy

      +

      TESTING.md - Test strategy

    10. Testing requirements
    11. Invariant test examples
      12. @@ -3541,7 +3547,7 @@

      Tier 2: Speciali

      Must reference: AGENTS.md for invariant definitions

    12. -

      CONTRIBUTING.md - Development workflow

      +

      CONTRIBUTING.md - Development workflow

    13. Contribution guidelines
    14. Commit templates
      15. @@ -3551,7 +3557,7 @@

      Tier 2: Speciali

      Tier 2b: Molecular Chemistry Module ⭐ BREAKTHROUGH

      Revolutionary extension: Complete chemistry emerges from TNFR nodal dynamics.

        -
      1. docs/MOLECULAR_CHEMISTRY_HUB.md - CENTRAL CHEMISTRY HUB
        2. +
      2. docs/MOLECULAR_CHEMISTRY_HUB.md - CENTRAL CHEMISTRY HUB
      3. Single source navigation for molecular chemistry breakthrough
      4. Theory consolidation and learning paths
      5. Complete cross-reference matrix for chemistry derivation
        6. @@ -3559,7 +3565,7 @@

        Tier 2b: Molecular Chem

        Must reference: AGENTS.md for nodal equation foundations

      6. -

        docs/examples/MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS.md - CANONICAL CHEMISTRY THEORY

        +

        docs/examples/MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS.md - CANONICAL CHEMISTRY THEORY

        • Complete derivation: nodal equation β†’ molecular chemistry
        • Chemical bonds as phase synchronization (U3)
          • @@ -3569,14 +3575,14 @@

          Tier 2b: Molecular Chem

      7. -

        docs/examples/AU_EXISTENCE_FROM_NODAL_EQUATION.md - Au emergence theory

        +

        docs/examples/AU_EXISTENCE_FROM_NODAL_EQUATION.md - Au emergence theory

        • Physics-grounded derivation: fields β†’ signatures β†’ Au-like patterns
        • Must reference: AGENTS.md for structural fields, nodal equation
      8. -

        src/tnfr/physics/README.md Β§ 9-10 - Implementation guide

        +

        src/tnfr/physics/README.md Β§ 9-10 - Implementation guide

    • @@ -3542,57 +3548,57 @@

    Grammar System (docs/grammar/)<

    - + - + - + - + - + - + - + - + - + - + - + @@ -3649,22 +3655,22 @@

    For ContributorsCONTRIBUTING.md +

     - + - + - + @@ -3681,27 +3687,27 @@

    Specialized TopicsSHA_ALGEBRA_PHYSICS.md +

     - + - + - + - + @@ -3719,22 +3725,22 @@

    🧬 Molecular Chemistry fro

    - + - + - + - + @@ -3816,27 +3822,27 @@

    πŸ—‚οΈ ArchiveπŸ” Finding What You Need

    I want to...

    ...understand TNFR philosophy -β†’ AGENTS.md Β§ Core Mission, 01-FUNDAMENTAL-CONCEPTS.md

    +β†’ AGENTS.md Β§ Core Mission, 01-FUNDAMENTAL-CONCEPTS.md

    ...learn the grammar rules -β†’ 02-CANONICAL-CONSTRAINTS.md, UNIFIED_GRAMMAR_RULES.md

    +β†’ 02-CANONICAL-CONSTRAINTS.md, UNIFIED_GRAMMAR_RULES.md

    ...implement a sequence -β†’ 04-VALID-SEQUENCES.md, GLYPH_SEQUENCES_GUIDE.md

    +β†’ 04-VALID-SEQUENCES.md, GLYPH_SEQUENCES_GUIDE.md

    ...understand U6 (structural potential) -β†’ U6_STRUCTURAL_POTENTIAL_CONFINEMENT.md

    +β†’ U6_STRUCTURAL_POTENTIAL_CONFINEMENT.md

    ...understand how chemistry emerges from TNFR ⭐ BREAKTHROUGH -β†’ MOLECULAR_CHEMISTRY_HUB.md (central navigation), Complete theory

    +β†’ MOLECULAR_CHEMISTRY_HUB.md (central navigation), Complete theory

    ...see Au emergence from first principles -β†’ AU_EXISTENCE_FROM_NODAL_EQUATION.md

    +β†’ AU_EXISTENCE_FROM_NODAL_EQUATION.md

    ...look up a term β†’ GLOSSARY.md

    ...understand an operator -β†’ 03-OPERATORS-AND-GLYPHS.md

    +β†’ 03-OPERATORS-AND-GLYPHS.md

    ...write tests -β†’ TESTING.md, 06-VALIDATION-AND-TESTING.md

    +β†’ TESTING.md, 06-VALIDATION-AND-TESTING.md

    ...contribute code -β†’ CONTRIBUTING.md, ARCHITECTURE.md

    +β†’ CONTRIBUTING.md, ARCHITECTURE.md

    ...migrate from old grammar -β†’ 07-MIGRATION-AND-EVOLUTION.md

    +β†’ 07-MIGRATION-AND-EVOLUTION.md

    πŸ“Š Documentation Quality Status

    Language: βœ… 100% English (0 Spanish)
    @@ -3845,7 +3851,7 @@

    πŸ“Š Documentation Quality StatusCross-References: βœ… Comprehensive bidirectional linking
    Broken Links: βœ… 91% reduced (637 β†’ 58)
    Single Source of Truth: βœ… Established (AGENTS + UNIFIED_GRAMMAR_RULES + GLOSSARY)

    -

    Last Audit: 2025-11-11 (Report)

    +

    Last Audit: 2025-11-11 (Report)

    πŸ”„ Maintenance

    This index is actively maintained. If you find: @@ -3920,5 +3926,61 @@

    πŸ”„ Maintenance - + + + \ No newline at end of file diff --git a/DYNAMIC_LIMITS_INTEGRATION/index.html b/DYNAMIC_LIMITS_INTEGRATION/index.html index 61f5ec762..20c1f029e 100644 --- a/DYNAMIC_LIMITS_INTEGRATION/index.html +++ b/DYNAMIC_LIMITS_INTEGRATION/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3559,5 +3565,61 @@

    References - + + + \ No newline at end of file diff --git a/DYNAMIC_LIMITS_RESEARCH/index.html b/DYNAMIC_LIMITS_RESEARCH/index.html index dbb04d1a3..41901b792 100644 --- a/DYNAMIC_LIMITS_RESEARCH/index.html +++ b/DYNAMIC_LIMITS_RESEARCH/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3554,5 +3560,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/EMISSION_METRICS_GUIDE/index.html b/EMISSION_METRICS_GUIDE/index.html index 81d3db895..ea6145533 100644 --- a/EMISSION_METRICS_GUIDE/index.html +++ b/EMISSION_METRICS_GUIDE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3416,5 +3422,61 @@

    See Also - + + + \ No newline at end of file diff --git a/EXTENDED_FIELDS_INTEGRATION_SUMMARY/index.html b/EXTENDED_FIELDS_INTEGRATION_SUMMARY/index.html index e94dc67e0..98297e1ec 100644 --- a/EXTENDED_FIELDS_INTEGRATION_SUMMARY/index.html +++ b/EXTENDED_FIELDS_INTEGRATION_SUMMARY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3443,5 +3449,61 @@

    βœ… Final Status - + + + \ No newline at end of file diff --git a/GLOSSARY/index.html b/GLOSSARY/index.html index 469d0d816..827e410db 100644 --- a/GLOSSARY/index.html +++ b/GLOSSARY/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -3742,7 +3748,7 @@

    TNFR GlossaryQuick operational reference for the Resonant Fractal Nature Theory (TNFR). This document provides API-focused definitions for code use only.

    πŸ“ SINGLE SOURCE OF TRUTH FOR MATHEMATICS:

    -

    Mathematical Foundations of TNFR

    +

    Mathematical Foundations of TNFR

    All mathematical formalization lives there: rigorous definitions, derivations, axioms, proofs, spectral theory, operator algebra, Hilbert spaces, and theoretical foundations.

    This glossary contains only operational quick reference for developers implementing TNFR networks.

    @@ -3800,7 +3806,7 @@

    Sense Index (Si)Mathematical Foundations - Metrics

    +Math: Mathematical Foundations - Metrics

    Structural Potential (Ξ¦_s)

    Code: compute_structural_potential(G, alpha=2.0) β†’ Dict[NodeId, float]
    @@ -3815,7 +3821,7 @@

    Structural Potential (Ξ¦_s)UNIFIED_GRAMMAR_RULES.md Β§ U6 - Complete derivation -- TNFR_FORCES_EMERGENCE.md Β§ 14-15 - Empirical validation +- TNFR_FORCES_EMERGENCE.md Β§ 14-15 - Empirical validation - src/tnfr/physics/fields.py - Implementation

    Interpretation: - Ξ¦_s minima = passive equilibrium states @@ -3965,7 +3971,7 @@

    Operator CompositionUNIFIED_GRAMMAR_RULES.md for complete rules
    Detailed Specs: See AGENTS.md Β§ The 13 Canonical Operators
    -Math: Mathematical Foundations Β§5

    +Math: Mathematical Foundations Β§5

    Invariants (Must Preserve)

    From AGENTS.md:

    @@ -4165,8 +4171,8 @@

    Unified GrammarUNIFIED_GRAMMAR_RULES.md - Complete derivations from physics - AGENTS.md Β§ Unified Grammar - Quick reference -- docs/grammar/U6_STRUCTURAL_POTENTIAL_CONFINEMENT.md - U6 complete specification -- TNFR_FORCES_EMERGENCE.md Β§ 14-15 - U6 validation details +- docs/grammar/U6_STRUCTURAL_POTENTIAL_CONFINEMENT.md - U6 complete specification +- TNFR_FORCES_EMERGENCE.md Β§ 14-15 - U6 validation details - src/tnfr/physics/fields.py - Ξ¦_s implementation

    Generator Operator

    @@ -4230,34 +4236,34 @@

    Core References (Essential)AGENTS.md ⭐ - Single source of truth for TNFR agent guidance, invariants, and philosophy

  • UNIFIED_GRAMMAR_RULES.md ⭐ - Grammar single source of truth (U1-U6 complete derivations)
    • -
  • Mathematical Foundations ⭐ - SINGLE SOURCE FOR ALL MATH (formalization, proofs, spectral theory)
    • +
  • Mathematical Foundations ⭐ - SINGLE SOURCE FOR ALL MATH (formalization, proofs, spectral theory)

    • Theory & Physics

    Implementation & API

    Grammar & Migration

    Testing & Development

    See Also Cross-References

    This glossary is bidirectionally linked with: @@ -4296,19 +4302,19 @@

    Molecular Geometry (TNFR Redefinit TNFR: Ξ”NFR minimization in coupled network topology
    Prediction: Stable configurations minimize reorganization pressure
    API: Network topology analysis after coupling sequences

    -

    Complete Theory: MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS.md
    -Implementation: Physics README Β§ 9-10

    +

    Complete Theory: MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS.md
    +Implementation: Physics README Β§ 9-10

    Contributing

    When adding new functionality:

      -
    1. Verify math: Check Mathematical Foundations
      2. +
    2. Verify math: Check Mathematical Foundations
    3. Preserve invariants: Follow AGENTS.md rules
    4. Use canonical terms: Reference this glossary
    5. Update docs: If introducing new concepts
      6. -
    6. Write tests: Cover invariants (see TESTING.md)
      7. +
    7. Write tests: Cover invariants (see TESTING.md)
    -

    For detailed contribution guidelines, see CONTRIBUTING.md.

    +

    For detailed contribution guidelines, see CONTRIBUTING.md.

    @@ -4370,5 +4376,61 @@

    Contributing - + + + \ No newline at end of file diff --git a/HEALTH_METRICS_GUIDE/index.html b/HEALTH_METRICS_GUIDE/index.html index f91be26df..423c0d67e 100644 --- a/HEALTH_METRICS_GUIDE/index.html +++ b/HEALTH_METRICS_GUIDE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -4187,5 +4193,61 @@

    Resources - + + + \ No newline at end of file diff --git a/INTERACTIONS_GUIDE/index.html b/INTERACTIONS_GUIDE/index.html index abc1ef409..f3870166f 100644 --- a/INTERACTIONS_GUIDE/index.html +++ b/INTERACTIONS_GUIDE/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -3392,5 +3398,61 @@

    Environment - + + + \ No newline at end of file diff --git a/K_PHI_TASK3_ASYMPTOTIC_FREEDOM/index.html b/K_PHI_TASK3_ASYMPTOTIC_FREEDOM/index.html index 992d62553..7a0583fda 100644 --- a/K_PHI_TASK3_ASYMPTOTIC_FREEDOM/index.html +++ b/K_PHI_TASK3_ASYMPTOTIC_FREEDOM/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3512,5 +3518,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/LIFE_EMERGENCE_FROM_TNFR/index.html b/LIFE_EMERGENCE_FROM_TNFR/index.html index 7c32f1edc..2e559b9a9 100644 --- a/LIFE_EMERGENCE_FROM_TNFR/index.html +++ b/LIFE_EMERGENCE_FROM_TNFR/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -3413,5 +3419,61 @@

    Next steps - + + + \ No newline at end of file diff --git a/LIFE_EMERGENCE_THEORETICAL_FRAMEWORK/index.html b/LIFE_EMERGENCE_THEORETICAL_FRAMEWORK/index.html index 208bb4ddb..7c0b6ee1f 100644 --- a/LIFE_EMERGENCE_THEORETICAL_FRAMEWORK/index.html +++ b/LIFE_EMERGENCE_THEORETICAL_FRAMEWORK/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3376,8 +3382,8 @@

    🌊 Revolutionary Impact

    Related Documents: - MOLECULAR_CHEMISTRY_HUB.md - Chemical foundations -- AGENTS.md - TNFR fundamentals
    -- UNIFIED_GRAMMAR_RULES.md - Operator physics +- AGENTS.md - TNFR fundamentals
    +- UNIFIED_GRAMMAR_RULES.md - Operator physics - Mathematical Foundations - Rigorous formalization (when complete)

    Status: βœ… TASK 1 COMPLETE - Theoretical framework established

    @@ -3441,5 +3447,61 @@

    🌊 Revolutionary Impact - + + + \ No newline at end of file diff --git a/LIFE_MATHEMATICAL_DERIVATION/index.html b/LIFE_MATHEMATICAL_DERIVATION/index.html index d49e30d2d..6b7172067 100644 --- a/LIFE_MATHEMATICAL_DERIVATION/index.html +++ b/LIFE_MATHEMATICAL_DERIVATION/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3438,9 +3444,9 @@

    βœ… Mathematical SummaryπŸ“š References

    Status: βœ… TASK 2 COMPLETE - Mathematical derivation established

    @@ -3505,5 +3511,61 @@

    πŸ“š References - + + + \ No newline at end of file diff --git a/MIGRATION_GUIDE_2.0/index.html b/MIGRATION_GUIDE_2.0/index.html index 06709c51e..e13ecaa5c 100644 --- a/MIGRATION_GUIDE_2.0/index.html +++ b/MIGRATION_GUIDE_2.0/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3883,5 +3889,61 @@

    Summary - + + + \ No newline at end of file diff --git a/MOLECULAR_CHEMISTRY_HUB/index.html b/MOLECULAR_CHEMISTRY_HUB/index.html index 30352c26f..4efb86a0b 100644 --- a/MOLECULAR_CHEMISTRY_HUB/index.html +++ b/MOLECULAR_CHEMISTRY_HUB/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3158,7 +3164,7 @@

    Molecular Chemistry fro

    Revolutionary paradigm: Complete chemistry emerges from TNFR nodal dynamics without additional postulates.

    Status: βœ… CANONICAL - Central navigation and theory consolidation
    Last Updated: 2025-11-12
    -Cross-References:     CANONICAL_SOURCES.md, GLOSSARY.md

    +Cross-References: CANONICAL_SOURCES.md, GLOSSARY.md

    🎯 Overview

    This hub centralizes the revolutionary breakthrough: the complete derivation of molecular chemistry from TNFR's single nodal equation βˆ‚EPI/βˆ‚t = Ξ½f Β· Ξ”NFR(t).

    @@ -3166,7 +3172,7 @@

    🎯 OverviewπŸ“š Complete Theory Chain

    1. Foundational Physics

    -

    Source: AGENTS.md Β§ Foundational Physics

    +

    Source: AGENTS.md Β§ Foundational Physics

    βˆ‚EPI/βˆ‚t = Ξ½f Β· Ξ”NFR(t)  [Nodal Equation]
            ↓
    Structural Field Tetrad: Ξ¦_s, |βˆ‡Ο†|, K_Ο†, ΞΎ_C
@@ -3187,7 +3193,7 @@ 
    3. Au Emergence Case Study4. Computational Implementation
    
-
    Source: src/tnfr/physics/README.md Β§ 9-10
    
+
    Source: src/tnfr/physics/README.md Β§ 9-10
    
 
    API Implementation:
 - tnfr.physics.patterns - Element pattern construction
 - tnfr.physics.signatures - Element classification via structural fields
@@ -3289,20 +3295,20 @@ 
    Theory DocumentsImplementation
    
 
 
    Foundation
    
 
 
    Testing & Validation
    
 
 
    
 
    πŸ’‘ Contributing to Molecular Chemistry Research
    
@@ -3334,8 +3340,8 @@ 
    🌟 Impact StatementRelated Documents
    
 
 
@@ -3399,5 +3405,61 @@
    - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3562,5 +3568,61 @@

    Summary - + + + \ No newline at end of file diff --git a/OPERATOR_COMPLETENESS/index.html b/OPERATOR_COMPLETENESS/index.html index e3e95c935..d3e8de3a5 100644 --- a/OPERATOR_COMPLETENESS/index.html +++ b/OPERATOR_COMPLETENESS/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -3423,5 +3429,61 @@

    References - + + + \ No newline at end of file diff --git a/PARTICLE_EMERGENCE_WITH_UNIFIED_SYSTEM/index.html b/PARTICLE_EMERGENCE_WITH_UNIFIED_SYSTEM/index.html index 1670e6937..656924127 100644 --- a/PARTICLE_EMERGENCE_WITH_UNIFIED_SYSTEM/index.html +++ b/PARTICLE_EMERGENCE_WITH_UNIFIED_SYSTEM/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3321,5 +3327,61 @@

    References - + + + \ No newline at end of file diff --git a/PATTERN_COOKBOOK/index.html b/PATTERN_COOKBOOK/index.html index c4a30a74c..11056d9d9 100644 --- a/PATTERN_COOKBOOK/index.html +++ b/PATTERN_COOKBOOK/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3660,5 +3666,61 @@

    🀝 Contributing New Recipes - + + + \ No newline at end of file diff --git a/PATTERN_REFERENCE/index.html b/PATTERN_REFERENCE/index.html index ff1cb4592..d3ca5d2ee 100644 --- a/PATTERN_REFERENCE/index.html +++ b/PATTERN_REFERENCE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3907,5 +3913,61 @@

    Resources - + + + \ No newline at end of file diff --git a/PRIME_EMERGENCE_THEORETICAL_FRAMEWORK/index.html b/PRIME_EMERGENCE_THEORETICAL_FRAMEWORK/index.html index 815c96958..22a005ed8 100644 --- a/PRIME_EMERGENCE_THEORETICAL_FRAMEWORK/index.html +++ b/PRIME_EMERGENCE_THEORETICAL_FRAMEWORK/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3300,7 +3306,7 @@

    Number Theory

    TNFR Physics

    @@ -3375,5 +3381,61 @@

    Graph Theory - + + + \ No newline at end of file diff --git a/RECEPTION_DUAL_ROLE/index.html b/RECEPTION_DUAL_ROLE/index.html index 10a4283c3..daba0d573 100644 --- a/RECEPTION_DUAL_ROLE/index.html +++ b/RECEPTION_DUAL_ROLE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3374,5 +3380,61 @@

    References - + + + \ No newline at end of file diff --git a/REPRODUCIBILITY/index.html b/REPRODUCIBILITY/index.html index 2420f62e0..fd42cb626 100644 --- a/REPRODUCIBILITY/index.html +++ b/REPRODUCIBILITY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3313,5 +3319,61 @@

    References - + + + \ No newline at end of file diff --git a/SCALABILITY/index.html b/SCALABILITY/index.html index 70784ceaa..d239479ee 100644 --- a/SCALABILITY/index.html +++ b/SCALABILITY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3478,5 +3484,61 @@

    References - + + + \ No newline at end of file diff --git a/SECURITY_CONFIG_GUIDE/index.html b/SECURITY_CONFIG_GUIDE/index.html index 040d8e7f4..000626800 100644 --- a/SECURITY_CONFIG_GUIDE/index.html +++ b/SECURITY_CONFIG_GUIDE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3523,5 +3529,61 @@

    Additional Resources - + + + \ No newline at end of file diff --git a/STRUCTURAL_FIELDS_TETRAD/index.html b/STRUCTURAL_FIELDS_TETRAD/index.html index 071f6f85a..68f6edc43 100644 --- a/STRUCTURAL_FIELDS_TETRAD/index.html +++ b/STRUCTURAL_FIELDS_TETRAD/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1450,7 +1456,7 @@
  • - + @@ -1703,7 +1709,7 @@
  • - + @@ -3644,5 +3650,61 @@

    Appendix: Topolo - + + + \ No newline at end of file diff --git a/THOL_CONFIGURATION_REFERENCE/index.html b/THOL_CONFIGURATION_REFERENCE/index.html index ff53886bf..2f088c66f 100644 --- a/THOL_CONFIGURATION_REFERENCE/index.html +++ b/THOL_CONFIGURATION_REFERENCE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3968,5 +3974,61 @@

    Version History - + + + \ No newline at end of file diff --git a/THOL_ENCAPSULATION_GUIDE/index.html b/THOL_ENCAPSULATION_GUIDE/index.html index 45803f5e1..854f8c8e7 100644 --- a/THOL_ENCAPSULATION_GUIDE/index.html +++ b/THOL_ENCAPSULATION_GUIDE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3889,5 +3895,61 @@

    Additional Resources - + + + \ No newline at end of file diff --git a/TNFR_CLASSICAL_NBODY/index.html b/TNFR_CLASSICAL_NBODY/index.html index c87bab178..0d8ad7d82 100644 --- a/TNFR_CLASSICAL_NBODY/index.html +++ b/TNFR_CLASSICAL_NBODY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -4499,5 +4505,61 @@

    Document History - + + + \ No newline at end of file diff --git a/TNFR_FORCES_EMERGENCE/index.html b/TNFR_FORCES_EMERGENCE/index.html index 67503616d..167ef7f6e 100644 --- a/TNFR_FORCES_EMERGENCE/index.html +++ b/TNFR_FORCES_EMERGENCE/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -5629,5 +5635,61 @@

    15.5 Recommendation for Cano - + + + \ No newline at end of file diff --git a/TNFR_NUMBER_THEORY_GUIDE/index.html b/TNFR_NUMBER_THEORY_GUIDE/index.html index 3dc3e12a7..6790fa11c 100644 --- a/TNFR_NUMBER_THEORY_GUIDE/index.html +++ b/TNFR_NUMBER_THEORY_GUIDE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3291,5 +3297,61 @@

    8. Summary - + + + \ No newline at end of file diff --git a/TROUBLESHOOTING/index.html b/TROUBLESHOOTING/index.html index e997175b0..d8f93bc30 100644 --- a/TROUBLESHOOTING/index.html +++ b/TROUBLESHOOTING/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1735,7 +1741,7 @@
  • - + @@ -1988,7 +1994,7 @@
  • - + @@ -4264,5 +4270,61 @@

    Getting Help - + + + \ No newline at end of file diff --git a/TYPING_MIGRATION_GUIDE/index.html b/TYPING_MIGRATION_GUIDE/index.html index d0231f398..2d2ad7708 100644 --- a/TYPING_MIGRATION_GUIDE/index.html +++ b/TYPING_MIGRATION_GUIDE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3397,5 +3403,61 @@

    References - + + + \ No newline at end of file diff --git a/UNIFIED_GRAMMAR_RULES/index.html b/UNIFIED_GRAMMAR_RULES/index.html index 3226229f4..066b5ff3d 100644 --- a/UNIFIED_GRAMMAR_RULES/index.html +++ b/UNIFIED_GRAMMAR_RULES/index.html @@ -59,7 +59,7 @@ - + @@ -112,7 +112,13 @@ - + + + + @@ -1230,7 +1236,7 @@
  • - + @@ -1483,7 +1489,7 @@
  • - + @@ -3833,7 +3839,7 @@

    PurposeAGENTS.md - Concise grammar reference for developers -- docs/grammar/02-CANONICAL-CONSTRAINTS.md - Technical specifications with implementation examples +- docs/grammar/02-CANONICAL-CONSTRAINTS.md - Technical specifications with implementation examples - GLOSSARY.md - Quick term reference - src/tnfr/operators/grammar.py - Canonical implementation

    @@ -5280,5 +5286,61 @@

    References - + + + \ No newline at end of file diff --git a/XI_C_CANONICAL_PROMOTION/index.html b/XI_C_CANONICAL_PROMOTION/index.html index 492f246d7..997cdf6fa 100644 --- a/XI_C_CANONICAL_PROMOTION/index.html +++ b/XI_C_CANONICAL_PROMOTION/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3498,5 +3504,61 @@

    References - + + + \ No newline at end of file diff --git a/XI_C_INTEGRATION_SUMMARY/index.html b/XI_C_INTEGRATION_SUMMARY/index.html index 8b1928125..b69085566 100644 --- a/XI_C_INTEGRATION_SUMMARY/index.html +++ b/XI_C_INTEGRATION_SUMMARY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3523,5 +3529,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/archive/DOCUMENTATION_CONSOLIDATION/index.html b/archive/DOCUMENTATION_CONSOLIDATION/index.html index 4ff2df479..afd3e95f9 100644 --- a/archive/DOCUMENTATION_CONSOLIDATION/index.html +++ b/archive/DOCUMENTATION_CONSOLIDATION/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3355,5 +3361,61 @@

    Questions? - + + + \ No newline at end of file diff --git a/archive/IMPLEMENTATION_CHECKLIST/index.html b/archive/IMPLEMENTATION_CHECKLIST/index.html index 3b355885c..92d64e931 100644 --- a/archive/IMPLEMENTATION_CHECKLIST/index.html +++ b/archive/IMPLEMENTATION_CHECKLIST/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3417,5 +3423,61 @@

    πŸŽ‰ Summary - + + + \ No newline at end of file diff --git a/archive/PATTERN_DETECTION_CONSOLIDATION/index.html b/archive/PATTERN_DETECTION_CONSOLIDATION/index.html index 1acc9ff20..91bfd17a3 100644 --- a/archive/PATTERN_DETECTION_CONSOLIDATION/index.html +++ b/archive/PATTERN_DETECTION_CONSOLIDATION/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3443,5 +3449,61 @@

    References - + + + \ No newline at end of file diff --git a/archive/VAL_IMPLEMENTATION_SUMMARY/index.html b/archive/VAL_IMPLEMENTATION_SUMMARY/index.html index 5ec3d7db0..d47aaaab0 100644 --- a/archive/VAL_IMPLEMENTATION_SUMMARY/index.html +++ b/archive/VAL_IMPLEMENTATION_SUMMARY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3357,5 +3363,61 @@

    Next Steps (Optional/Future) - + + + \ No newline at end of file diff --git a/archive/ZHIR_BIFURCATION_IMPLEMENTATION/index.html b/archive/ZHIR_BIFURCATION_IMPLEMENTATION/index.html index 52dcbfa01..e1440b81b 100644 --- a/archive/ZHIR_BIFURCATION_IMPLEMENTATION/index.html +++ b/archive/ZHIR_BIFURCATION_IMPLEMENTATION/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3508,5 +3514,61 @@

    Summary - + + + \ No newline at end of file diff --git a/archive/audits/DEEP_CONSISTENCY_AUDIT_REPORT/index.html b/archive/audits/DEEP_CONSISTENCY_AUDIT_REPORT/index.html index 61d428a38..42857afbc 100644 --- a/archive/audits/DEEP_CONSISTENCY_AUDIT_REPORT/index.html +++ b/archive/audits/DEEP_CONSISTENCY_AUDIT_REPORT/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3620,5 +3626,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/archive/audits/DOCUMENTATION_AUDIT_REPORT/index.html b/archive/audits/DOCUMENTATION_AUDIT_REPORT/index.html index 7a9c77330..adafaf1ff 100644 --- a/archive/audits/DOCUMENTATION_AUDIT_REPORT/index.html +++ b/archive/audits/DOCUMENTATION_AUDIT_REPORT/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3484,5 +3490,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/archive/audits/U4B_AUDIT_REPORT/index.html b/archive/audits/U4B_AUDIT_REPORT/index.html index 540faf3f3..34a6f8b7f 100644 --- a/archive/audits/U4B_AUDIT_REPORT/index.html +++ b/archive/audits/U4B_AUDIT_REPORT/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3544,5 +3550,61 @@

    References - + + + \ No newline at end of file diff --git a/archive/index.html b/archive/index.html index bc96e8359..7f6a36c60 100644 --- a/archive/index.html +++ b/archive/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3260,5 +3266,61 @@

    Note&par - + + + \ No newline at end of file diff --git a/archive/phases/IMPLEMENTATION_COMPLETE/index.html b/archive/phases/IMPLEMENTATION_COMPLETE/index.html index e9400241e..ef48aacb3 100644 --- a/archive/phases/IMPLEMENTATION_COMPLETE/index.html +++ b/archive/phases/IMPLEMENTATION_COMPLETE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3496,5 +3502,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/archive/phases/IMPLEMENTATION_SUMMARY/index.html b/archive/phases/IMPLEMENTATION_SUMMARY/index.html index 9b5825a89..ea3c07c6c 100644 --- a/archive/phases/IMPLEMENTATION_SUMMARY/index.html +++ b/archive/phases/IMPLEMENTATION_SUMMARY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3500,5 +3506,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/archive/phases/PHASE2_COMPLETE/index.html b/archive/phases/PHASE2_COMPLETE/index.html index 8553ab4a6..1be1d6ace 100644 --- a/archive/phases/PHASE2_COMPLETE/index.html +++ b/archive/phases/PHASE2_COMPLETE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3477,5 +3483,61 @@

    Stats at a Glance - + + + \ No newline at end of file diff --git a/archive/phases/PHASE2_IMPLEMENTATION_SUMMARY/index.html b/archive/phases/PHASE2_IMPLEMENTATION_SUMMARY/index.html index 4f1af79e5..02e0fac37 100644 --- a/archive/phases/PHASE2_IMPLEMENTATION_SUMMARY/index.html +++ b/archive/phases/PHASE2_IMPLEMENTATION_SUMMARY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3478,5 +3484,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/archive/phases/PHASE2_MIGRATION_GUIDE/index.html b/archive/phases/PHASE2_MIGRATION_GUIDE/index.html index 4fbe0f79e..1f65d7ce6 100644 --- a/archive/phases/PHASE2_MIGRATION_GUIDE/index.html +++ b/archive/phases/PHASE2_MIGRATION_GUIDE/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3402,5 +3408,61 @@

    Summary - + + + \ No newline at end of file diff --git a/archive/phases/PHASE3_FINAL_REPORT/index.html b/archive/phases/PHASE3_FINAL_REPORT/index.html index ce29d9aff..df6e1d66f 100644 --- a/archive/phases/PHASE3_FINAL_REPORT/index.html +++ b/archive/phases/PHASE3_FINAL_REPORT/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3559,5 +3565,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/archive/phases/PHASE3_IMPLEMENTATION_SUMMARY/index.html b/archive/phases/PHASE3_IMPLEMENTATION_SUMMARY/index.html index 7c89b8138..623fd02ac 100644 --- a/archive/phases/PHASE3_IMPLEMENTATION_SUMMARY/index.html +++ b/archive/phases/PHASE3_IMPLEMENTATION_SUMMARY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3364,5 +3370,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/archive/phases/PHASE4_IMPLEMENTATION_SUMMARY/index.html b/archive/phases/PHASE4_IMPLEMENTATION_SUMMARY/index.html index 60e207076..ecb284002 100644 --- a/archive/phases/PHASE4_IMPLEMENTATION_SUMMARY/index.html +++ b/archive/phases/PHASE4_IMPLEMENTATION_SUMMARY/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3550,5 +3556,61 @@

    Next Steps - + + + \ No newline at end of file diff --git a/archive/phases/SESSION4_FINAL_REPORT/index.html b/archive/phases/SESSION4_FINAL_REPORT/index.html index 4fc36ecb7..411600c81 100644 --- a/archive/phases/SESSION4_FINAL_REPORT/index.html +++ b/archive/phases/SESSION4_FINAL_REPORT/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3543,5 +3549,61 @@

    Conclusion - + + + \ No newline at end of file diff --git a/arithmetic_tnfr_mathematical_definitions/index.html b/arithmetic_tnfr_mathematical_definitions/index.html index 63d621f3a..b0a187305 100644 --- a/arithmetic_tnfr_mathematical_definitions/index.html +++ b/arithmetic_tnfr_mathematical_definitions/index.html @@ -55,7 +55,7 @@ - + @@ -103,7 +103,13 @@ - + + + + @@ -1221,7 +1227,7 @@
  • - + @@ -1474,7 +1480,7 @@
  • - + @@ -4993,5 +4999,61 @@

    ================================================== - + + + \ No newline at end of file diff --git a/backends/index.html b/backends/index.html index dc49273be..b82a92c5a 100644 --- a/backends/index.html +++ b/backends/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
  • - + @@ -1479,7 +1485,7 @@
  • - + @@ -3810,5 +3816,61 @@

    References - + + + \ No newline at end of file diff --git a/changelog.d/add-reproducibility-infrastructure.feature/index.html b/changelog.d/add-reproducibility-infrastructure.feature/index.html index 3fb3f8153..992f9a9fb 100644 --- a/changelog.d/add-reproducibility-infrastructure.feature/index.html +++ b/changelog.d/add-reproducibility-infrastructure.feature/index.html @@ -55,7 +55,7 @@ - + @@ -103,7 +103,13 @@ - + + + + @@ -1221,7 +1227,7 @@
  • - + @@ -1474,7 +1480,7 @@
  • - + @@ -3219,5 +3225,61 @@

    Add reproducibility infrastructure.feature

    - + + + \ No newline at end of file diff --git a/changelog.d/add-val-dnfr-validation.enhancement/index.html b/changelog.d/add-val-dnfr-validation.enhancement/index.html index 94e2f690a..cfd3ebba5 100644 --- a/changelog.d/add-val-dnfr-validation.enhancement/index.html +++ b/changelog.d/add-val-dnfr-validation.enhancement/index.html @@ -55,7 +55,7 @@ - + @@ -103,7 +103,13 @@ - + + + + @@ -1221,7 +1227,7 @@
  • - + @@ -1474,7 +1480,7 @@
  • - + @@ -3220,5 +3226,61 @@

    Add val dnfr validation.enhancement

    - + + + \ No newline at end of file diff --git a/changelog.d/integrate-classical-mechanics-docs.documentation/index.html b/changelog.d/integrate-classical-mechanics-docs.documentation/index.html index 4aef6d9c3..be90e5e3f 100644 --- a/changelog.d/integrate-classical-mechanics-docs.documentation/index.html +++ b/changelog.d/integrate-classical-mechanics-docs.documentation/index.html @@ -55,7 +55,7 @@ - + @@ -103,7 +103,13 @@ - + + + + @@ -1221,7 +1227,7 @@
  • - + @@ -1474,7 +1480,7 @@
  • - + @@ -3220,5 +3226,61 @@

    Integrate classical mechanics docs.documentation

    - + + + \ No newline at end of file diff --git a/changelog.d/remove-tnfr-helpers.documentation/index.html b/changelog.d/remove-tnfr-helpers.documentation/index.html index a4b7c3cd3..9ca342e6e 100644 --- a/changelog.d/remove-tnfr-helpers.documentation/index.html +++ b/changelog.d/remove-tnfr-helpers.documentation/index.html @@ -55,7 +55,7 @@ - + @@ -103,7 +103,13 @@ - + + + + @@ -1221,7 +1227,7 @@
  • - + @@ -1474,7 +1480,7 @@
  • - + @@ -3217,5 +3223,61 @@

    Remove tnfr helpers.documentation

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    Verify pytest 8x compatibility.test

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    10. Research Extensions - + + + \ No newline at end of file diff --git a/examples/MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS/index.html b/examples/MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS/index.html index 77dd1e049..bd582971a 100644 --- a/examples/MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS/index.html +++ b/examples/MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
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    12. ConclusiΓ³n: La QuΓ­mica Reima - + + + \ No newline at end of file diff --git a/examples/MOLECULE_ATLAS/index.html b/examples/MOLECULE_ATLAS/index.html index dd7e14c99..3ef7e7db1 100644 --- a/examples/MOLECULE_ATLAS/index.html +++ b/examples/MOLECULE_ATLAS/index.html @@ -55,7 +55,7 @@ - + @@ -108,7 +108,13 @@ - + + + + @@ -1226,7 +1232,7 @@
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    • README.mdREADME.md Grammar documentation hub βœ… Active
    01-FUNDAMENTAL-CONCEPTS.md01-FUNDAMENTAL-CONCEPTS.md TNFR ontology & nodal equation βœ… Active
    02-CANONICAL-CONSTRAINTS.md02-CANONICAL-CONSTRAINTS.md U1-U6 complete specifications βœ… Active
    03-OPERATORS-AND-GLYPHS.md03-OPERATORS-AND-GLYPHS.md 13 canonical operators catalog βœ… Active
    04-VALID-SEQUENCES.md04-VALID-SEQUENCES.md Pattern library & anti-patterns βœ… Active
    05-TECHNICAL-IMPLEMENTATION.md05-TECHNICAL-IMPLEMENTATION.md Code architecture βœ… Active
    06-VALIDATION-AND-TESTING.md06-VALIDATION-AND-TESTING.md Test strategies βœ… Active
    07-MIGRATION-AND-EVOLUTION.md07-MIGRATION-AND-EVOLUTION.md Grammar evolution history βœ… Active
    08-QUICK-REFERENCE.md08-QUICK-REFERENCE.md Cheat sheet βœ… Active
    U6_STRUCTURAL_POTENTIAL_CONFINEMENT.mdU6_STRUCTURAL_POTENTIAL_CONFINEMENT.md U6 complete specification βœ… Canonical
    MASTER-INDEX.mdMASTER-INDEX.md System conceptual map βœ… Active
    CONTRIBUTING.md Contribution guidelines Before first PR
    TESTING.mdTESTING.md Test conventions Writing tests
    MIGRATION_GUIDE.mdMIGRATION_GUIDE.md Modular architecture migration Upgrading code
    SECURITY.mdSECURITY.md Security policies Reporting issues
    SHA_ALGEBRA_PHYSICS.md Silence operator physics Physics researchers
    GLYPH_SEQUENCES_GUIDE.mdGLYPH_SEQUENCES_GUIDE.md Operator sequence patterns Sequence designers
    docs/TNFR_FORCES_EMERGENCE.mddocs/TNFR_FORCES_EMERGENCE.md Structural fields (Ξ¦_s) validation U6 researchers
    docs/NBODY_COMPARISON.mddocs/NBODY_COMPARISON.md TNFR vs classical N-body Physicists
    docs/TNFR_NUMBER_THEORY_GUIDE.mddocs/TNFR_NUMBER_THEORY_GUIDE.md Number theory from TNFR: Ξ”NFR prime criterion, UM/RA on arithmetic graph, field telemetry ( βˆ‡Ο†
    docs/MOLECULAR_CHEMISTRY_HUB.mddocs/MOLECULAR_CHEMISTRY_HUB.md πŸ›οΈ CENTRAL HUB - Complete navigation & theory consolidation ⭐ CANONICAL
    docs/examples/MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS.mddocs/examples/MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS.md Complete derivation - Chemistry from nodal equation ⭐ CANONICAL
    docs/examples/AU_EXISTENCE_FROM_NODAL_EQUATION.mddocs/examples/AU_EXISTENCE_FROM_NODAL_EQUATION.md Au emergence from structural fields βœ… Validated
    src/tnfr/physics/README.md Β§ 9-10src/tnfr/physics/README.md Β§ 9-10 Implementation guide - Signatures & patterns βœ… Technical