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lines changed- AGENTS
- API_CONTRACTS
- ARCHITECTURE
- CANONICAL_OZ_SEQUENCES
- CANONICAL_SOURCES
- CELL_EMERGENCE_FROM_TNFR
- CROSS_REFERENCE_MATRIX
- DOCUMENTATION_HIERARCHY
- DOCUMENTATION_INDEX
- DYNAMIC_LIMITS_INTEGRATION
- DYNAMIC_LIMITS_RESEARCH
- EMISSION_METRICS_GUIDE
- EXTENDED_FIELDS_INTEGRATION_SUMMARY
- GLOSSARY
- HEALTH_METRICS_GUIDE
- INTERACTIONS_GUIDE
- K_PHI_TASK3_ASYMPTOTIC_FREEDOM
- LIFE_EMERGENCE_FROM_TNFR
- LIFE_EMERGENCE_THEORETICAL_FRAMEWORK
- LIFE_MATHEMATICAL_DERIVATION
- MIGRATION_GUIDE_2.0
- MOLECULAR_CHEMISTRY_HUB
- NBODY_COMPARISON
- OPERATOR_COMPLETENESS
- PARTICLE_EMERGENCE_WITH_UNIFIED_SYSTEM
- PATTERN_COOKBOOK
- PATTERN_REFERENCE
- PRIME_EMERGENCE_THEORETICAL_FRAMEWORK
- RECEPTION_DUAL_ROLE
- REPRODUCIBILITY
- SCALABILITY
- SECURITY_CONFIG_GUIDE
- STRUCTURAL_FIELDS_TETRAD
- THOL_CONFIGURATION_REFERENCE
- THOL_ENCAPSULATION_GUIDE
- TNFR_CLASSICAL_NBODY
- TNFR_FORCES_EMERGENCE
- TNFR_NUMBER_THEORY_GUIDE
- TROUBLESHOOTING
- TYPING_MIGRATION_GUIDE
- UNIFIED_GRAMMAR_RULES
- XI_C_CANONICAL_PROMOTION
- XI_C_INTEGRATION_SUMMARY
- archive
- DOCUMENTATION_CONSOLIDATION
- IMPLEMENTATION_CHECKLIST
- PATTERN_DETECTION_CONSOLIDATION
- VAL_IMPLEMENTATION_SUMMARY
- ZHIR_BIFURCATION_IMPLEMENTATION
- audits
- DEEP_CONSISTENCY_AUDIT_REPORT
- DOCUMENTATION_AUDIT_REPORT
- U4B_AUDIT_REPORT
- phases
- IMPLEMENTATION_COMPLETE
- IMPLEMENTATION_SUMMARY
- PHASE2_COMPLETE
- PHASE2_IMPLEMENTATION_SUMMARY
- PHASE2_MIGRATION_GUIDE
- PHASE3_FINAL_REPORT
- PHASE3_IMPLEMENTATION_SUMMARY
- PHASE4_IMPLEMENTATION_SUMMARY
- SESSION4_FINAL_REPORT
- arithmetic_tnfr_mathematical_definitions
- assets
- images
- interactions
- login-browse-purchase
- retry-on-error
- search-filter-paginate
- javascripts
- lunr
- min
- workers
- stylesheets
- backends
- changelog.d
- add-reproducibility-infrastructure.feature
- add-val-dnfr-validation.enhancement
- integrate-classical-mechanics-docs.documentation
- remove-tnfr-helpers.documentation
- verify-pytest-8x-compatibility.test
- ci
- examples
- ATOMS_AND_MOLECULES_STUDY
- AU_EXISTENCE_FROM_NODAL_EQUATION
- MOLECULAR_CHEMISTRY_FROM_NODAL_DYNAMICS
- MOLECULE_ATLAS
- PERIODIC_TABLE_ATLAS
- PHASE_GATED_COUPLING_DEMO
- TRIATOMIC_ATLAS
- extensions/EXTENSIONS_GUIDE
- grammar
- 01-FUNDAMENTAL-CONCEPTS
- 02-CANONICAL-CONSTRAINTS
- 03-OPERATORS-AND-GLYPHS
- 04-VALID-SEQUENCES
- 05-TECHNICAL-IMPLEMENTATION
- 06-VALIDATION-AND-TESTING
- 07-MIGRATION-AND-EVOLUTION
- 08-QUICK-REFERENCE
- AUGMENTED_NODAL_EQUATION
- CODE_DOCS_CROSSREF
- CROSS-REFERENCE-INDEX
- EXECUTIVE-SUMMARY
- HEXAD_OVERVIEW
- MASTER-INDEX
- OPERATORS-CATALOG-SUMMARY
- TESTING-SUMMARY
- TOOLING-AND-AUTOMATION
- U6_STRUCTURAL_FIELD_TETRAD
- U6_STRUCTURAL_POTENTIAL_CONFINEMENT
- examples
- 01-basic-bootstrap
- 02-intermediate-exploration
- 03-advanced-bifurcation
- all-operators-catalog
- u1-initiation-closure-examples
- u2-convergence-examples
- u3-resonant-coupling-examples
- u4-bifurcation-examples
- u5-multiscale-coherence-examples
- schemas
- legacy
- modules
- dynamics
- extensions
- mathematics
- metrics
- operators
- physics
- sdk
- telemetry
- tutorials
- research
- OPERATOR_SEQUENCES_MOLECULAR_STABILITY
- PHASE_GRADIENT_VALIDATION
- U6_INVESTIGATION_REPORT
- docs/research/results
- outputs
- tnfr_research_utils
- search
- sequence_generator
- source
- advanced
- ARCHITECTURE_GUIDE
- DEVELOPMENT_WORKFLOW
- PERFORMANCE_OPTIMIZATION
- TESTING_STRATEGIES
- api
- OPERATORS_VISUAL_GUIDE
- docstring_style
- operators
- overview
- telemetry
- conf
- examples
- SHA_CLINICAL_APPLICATIONS
- USE_CASES_GUIDE
- adaptive_ai_system
- biological_coherence_example
- controlled_dissonance
- optical_cavity_feedback
- social_network_dynamics
- supply_chain_resilience
- urban_traffic_flow
- worked_examples
- fase2_integration
- foundations
- getting-started
- FAQ
- INTERACTIVE_TUTORIAL
- LEARNING_PATHS
- QUICKSTART_NEW
- TNFR_CONCEPTS
- math-backends
- migrating-remesh-window
- optional-dependencies
- quickstart
- grammar
- 01-FUNDAMENTAL-CONCEPTS
- 02-CANONICAL-CONSTRAINTS
- 03-OPERATORS-AND-GLYPHS
- 04-VALID-SEQUENCES
- 05-TECHNICAL-IMPLEMENTATION
- 06-VALIDATION-AND-TESTING
- 07-MIGRATION-AND-EVOLUTION
- 08-QUICK-REFERENCE
- CODE_DOCS_CROSSREF
- CROSS-REFERENCE-INDEX
- EXECUTIVE-SUMMARY
- MASTER-INDEX
- OPERATORS-CATALOG-SUMMARY
- TESTING-SUMMARY
- TOOLING-AND-AUTOMATION
- operators/NAV_GUIDE
- releases
- security
- codeql
- dependabot
- dependency-auditing
- monitoring
- style_guide
- theory
- 01_structural_frequency_primer
- 02_phase_synchrony_lattices
- 03_delta_nfr_gradient_fields
- 04_coherence_metrics_walkthrough
- 04_nfr_validator_and_metrics
- 05_sense_index_calibration
- 06_recursivity_cascades
- 07_emergence_classical_mechanics
- 08_classical_mechanics_euler_lagrange
- 09_classical_mechanics_numerical_validation
- mathematical_foundations
- tools/CLI
- user-guide
- METRICS_INTERPRETATION
- OPERATORS_GUIDE
- TROUBLESHOOTING
- tools/CLI_USER_GUIDE
- utils_reference
- website
- api
- assets
- health-metrics
- patterns
- tools
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