Merge branch 'main' into dependabot/github_actions/actions/github-script-8

Author: fermga

docs/grammar/08-QUICK-REFERENCE.md

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+# TNFR Grammar Quick Reference
+
+**One-page cheat sheet for TNFR grammar validation**
+
+[💾 Download PDF](08-QUICK-REFERENCE.pdf) • [📖 Full Docs](README.md) • [🔬 Deep Dive](02-CANONICAL-CONSTRAINTS.md)
+
+---
+
+## 🎯 The Four Canonical Constraints
+
+```
+┌─────────────────────────────────────────────────────────────────┐
+│ U1: STRUCTURAL INITIATION & CLOSURE                             │
+│     U1a: Start with generators {AL, NAV, REMESH}               │
+│     U1b: End with closures {SHA, NAV, REMESH, OZ}              │
+│                                                                 │
+│ U2: CONVERGENCE & BOUNDEDNESS                                   │
+│     If destabilizers {OZ, ZHIR, VAL}                           │
+│     Then include stabilizers {IL, THOL}                        │
+│                                                                 │
+│ U3: RESONANT COUPLING                                           │
+│     If coupling/resonance {UM, RA}                             │
+│     Then verify phase |φᵢ - φⱼ| ≤ Δφ_max                       │
+│                                                                 │
+│ U4: BIFURCATION DYNAMICS                                        │
+│     U4a: If triggers {OZ, ZHIR}                                │
+│          Then include handlers {THOL, IL}                      │
+│     U4b: If transformers {ZHIR, THOL}                          │
+│          Then recent destabilizer (~3 ops)                     │
+│          + ZHIR needs prior IL                                 │
+└─────────────────────────────────────────────────────────────────┘
+```
+
+---
+
+## 📋 Operator Classification
+
+| Operator | Glyph | Generator | Closure | Stabilizer | Destabilizer | Trigger | Handler | Transformer | Coupling |
+|----------|-------|-----------|---------|------------|--------------|---------|---------|-------------|----------|
+| Emission | AL | ✓ | | | | | | | |
+| Reception | EN | | | | | | | | |
+| Coherence | IL | | | ✓ | | | ✓ | | |
+| Dissonance | OZ | | ✓ | | ✓ | ✓ | | | |
+| Coupling | UM | | | | | | | | ✓ |
+| Resonance | RA | | | | | | | | ✓ |
+| Silence | SHA | | ✓ | | | | | | |
+| Expansion | VAL | | | | ✓ | | | | |
+| Contraction | NUL | | | | | | | | |
+| SelfOrganization | THOL | | | ✓ | | | ✓ | ✓ | |
+| Mutation | ZHIR | | | | ✓ | ✓ | | ✓ | |
+| Transition | NAV | ✓ | ✓ | | | | | | |
+| Recursivity | REMESH | ✓ | ✓ | | | | | | |
+
+---
+
+## 🔄 Common Sequence Patterns
+
+### ✅ Valid Patterns
+
+```python
+# Bootstrap (minimal)
+[Emission, Coherence, Silence]
+
+# Basic Activation
+[Emission, Reception, Coherence, Silence]
+
+# Controlled Exploration
+[Emission, Dissonance, Coherence, Silence]
+
+# Bifurcation with Handling
+[Emission, Coherence, Dissonance, SelfOrganization, Coherence, Silence]
+
+# Mutation with Context
+[Emission, Coherence, Dissonance, Mutation, Coherence, Silence]
+
+# Propagation
+[Emission, Coupling, Resonance, Coherence, Silence]
+
+# Multi-scale
+[Emission, Coupling, SelfOrganization, Recursivity]
+```
+
+### ❌ Anti-Patterns
+
+```python
+# ✗ No generator when EPI=0
+[Coherence, Silence]  # Violates U1a
+
+# ✗ No closure
+[Emission, Coherence]  # Violates U1b
+
+# ✗ Destabilizer without stabilizer
+[Emission, Dissonance, Silence]  # Violates U2
+
+# ✗ Mutation without context
+[Emission, Mutation, Silence]  # Violates U4b
+
+# ✗ Mutation without prior Coherence
+[Emission, Dissonance, Mutation, Coherence, Silence]  # Violates U4b
+```
+
+---
+
+## 💻 Quick Code Reference
+
+### Validate a Sequence
+
+```python
+from tnfr.operators.grammar import validate_grammar
+from tnfr.operators.definitions import Emission, Coherence, Silence
+
+sequence = [Emission(), Coherence(), Silence()]
+
+try:
+    is_valid = validate_grammar(sequence, epi_initial=0.0)
+    print("✓ Valid sequence")
+except ValueError as e:
+    print(f"✗ Invalid: {e}")
+```
+
+### Check Operator Sets
+
+```python
+from tnfr.operators.grammar import (
+    GENERATORS,
+    CLOSURES,
+    STABILIZERS,
+    DESTABILIZERS,
+    COUPLING_RESONANCE,
+    BIFURCATION_TRIGGERS,
+    BIFURCATION_HANDLERS,
+    TRANSFORMERS,
+)
+
+# Check if operator is in a set
+if "emission" in GENERATORS:
+    print("Emission is a generator")
+```
+
+### Apply Operators
+
+```python
+from tnfr.operators.definitions import Emission, Coherence
+import networkx as nx
+
+G = nx.Graph()
+G.add_node(0, EPI=0.0, vf=1.0, theta=0.0, dnfr=0.0)
+
+# Apply operator
+Emission()(G, 0)
+Coherence()(G, 0)
+
+print(f"EPI: {G.nodes[0]['EPI']:.3f}")
+```
+
+### Phase Verification
+
+```python
+from tnfr.operators.grammar import validate_resonant_coupling
+import numpy as np
+
+# Check phase compatibility
+phi_i = G.nodes[0]['theta']
+phi_j = G.nodes[1]['theta']
+
+try:
+    validate_resonant_coupling(G, 0, 1, delta_phi_max=np.pi/2)
+    print("✓ Phase compatible")
+except ValueError as e:
+    print(f"✗ Phase mismatch: {e}")
+```
+
+---
+
+## 🔍 Decision Tree
+
+```
+Is EPI=0?
+├─ Yes → Start with generator {AL, NAV, REMESH}
+└─ No  → Any operator OK
+
+Does sequence have destabilizers {OZ, ZHIR, VAL}?
+├─ Yes → Include stabilizer {IL, THOL}
+└─ No  → Continue
+
+Does sequence have coupling/resonance {UM, RA}?
+├─ Yes → Verify phase at runtime
+└─ No  → Continue
+
+Does sequence have bifurcation triggers {OZ, ZHIR}?
+├─ Yes → Include handler {THOL, IL}
+└─ No  → Continue
+
+Does sequence have transformers {ZHIR, THOL}?
+├─ Yes → Ensure recent destabilizer (~3 ops)
+│        → For ZHIR: Ensure prior IL
+└─ No  → Continue
+
+Does sequence end with closure {SHA, NAV, REMESH, OZ}?
+├─ Yes → ✓ Valid
+└─ No  → ✗ Add closure
+```
+
+---
+
+## 🐛 Common Errors & Solutions
+
+### Error: "Need generator when EPI=0"
+
+**Cause:** Sequence doesn't start with generator when `epi_initial=0.0`
+
+**Solution:**
+```python
+# ✗ Wrong
+sequence = [Coherence(), Silence()]
+
+# ✓ Fixed
+sequence = [Emission(), Coherence(), Silence()]
+
+# OR set epi_initial > 0 if starting from existing structure
+validate_grammar(sequence, epi_initial=1.0)
+```
+
+### Error: "Destabilizer without stabilizer"
+
+**Cause:** {OZ, ZHIR, VAL} present but no {IL, THOL}
+
+**Solution:**
+```python
+# ✗ Wrong
+sequence = [Emission(), Dissonance(), Silence()]
+
+# ✓ Fixed
+sequence = [Emission(), Dissonance(), Coherence(), Silence()]
+```
+
+### Error: "Transformer needs recent destabilizer"
+
+**Cause:** {ZHIR, THOL} without recent destabilizer
+
+**Solution:**
+```python
+# ✗ Wrong
+sequence = [Emission(), Coherence(), Mutation(), Silence()]
+
+# ✓ Fixed - destabilizer within ~3 ops
+sequence = [Emission(), Dissonance(), Mutation(), Coherence(), Silence()]
+```
+
+### Error: "Mutation needs prior coherence"
+
+**Cause:** ZHIR without IL before it
+
+**Solution:**
+```python
+# ✗ Wrong
+sequence = [Emission(), Dissonance(), Mutation(), Coherence(), Silence()]
+
+# ✓ Fixed - Coherence before Mutation
+sequence = [Emission(), Coherence(), Dissonance(), Mutation(), Coherence(), Silence()]
+```
+
+### Error: "Sequence must end with closure"
+
+**Cause:** Last operator is not in {SHA, NAV, REMESH, OZ}
+
+**Solution:**
+```python
+# ✗ Wrong
+sequence = [Emission(), Coherence()]
+
+# ✓ Fixed
+sequence = [Emission(), Coherence(), Silence()]
+```
+
+### Error: "Phase mismatch in coupling"
+
+**Cause:** |φᵢ - φⱼ| > Δφ_max (typically π/2)
+
+**Solution:**
+```python
+# Check phase before coupling
+delta_phi = abs(G.nodes[i]['theta'] - G.nodes[j]['theta'])
+if delta_phi > np.pi/2:
+    # Adjust phase or don't couple these nodes
+    pass
+```
+
+---
+
+## 📊 Grammar Rule Summary
+
+| Rule | When | What | Why |
+|------|------|------|-----|
+| U1a | EPI=0 | Start with {AL, NAV, REMESH} | ∂EPI/∂t undefined at EPI=0 |
+| U1b | Always | End with {SHA, NAV, REMESH, OZ} | Sequences need endpoints |
+| U2 | Has {OZ, ZHIR, VAL} | Include {IL, THOL} | ∫νf·ΔNFR dt must converge |
+| U3 | Has {UM, RA} | Verify \|φᵢ - φⱼ\| ≤ Δφ_max | Resonance physics |
+| U4a | Has {OZ, ZHIR} | Include {THOL, IL} | Bifurcations need control |
+| U4b | Has {ZHIR, THOL} | Recent destabilizer + ZHIR needs IL | Threshold energy needed |
+
+---
+
+## 🎯 Operator Quick Lookup
+
+### By Purpose
+
+**Initialize:** AL (Emission), NAV (Transition), REMESH (Recursivity)  
+**Stabilize:** IL (Coherence), THOL (SelfOrganization)  
+**Destabilize:** OZ (Dissonance), ZHIR (Mutation), VAL (Expansion)  
+**Propagate:** UM (Coupling), RA (Resonance)  
+**Pause:** SHA (Silence)  
+**Transform:** ZHIR (Mutation), THOL (SelfOrganization)  
+**Adjust:** VAL (Expansion), NUL (Contraction)
+
+### By Effect on ∂EPI/∂t
+
+**Increase:** AL, EN, OZ, VAL, RA  
+**Decrease:** IL, THOL, NUL  
+**Zero:** SHA  
+**Transform:** ZHIR, NAV, REMESH  
+**Couple:** UM, RA
+
+---
+
+## 📈 Metrics to Monitor
+
+**Essential telemetry for every simulation:**
+
+- **C(t)**: Total Coherence [0, 1]
+  - \> 0.7 = strong coherence
+  - < 0.3 = fragmentation risk
+  
+- **Si**: Sense Index [0, 1⁺]
+  - \> 0.8 = excellent stability
+  - < 0.4 = changes may cause bifurcation
+
+- **ΔNFR**: Reorganization Gradient
+  - Sign: + expansion, - contraction
+  - Magnitude: pressure intensity
+
+- **νf**: Structural Frequency (Hz_str)
+  - νf → 0 = node death
+  - νf > 0 = active evolution
+
+- **φ (theta)**: Phase [0, 2π]
+  - Δφ determines coupling compatibility
+  - |Δφ| < π/2 typically required
+
+---
+
+## 🔗 Further Reading
+
+- **[01-FUNDAMENTAL-CONCEPTS.md](01-FUNDAMENTAL-CONCEPTS.md)** - TNFR basics
+- **[02-CANONICAL-CONSTRAINTS.md](02-CANONICAL-CONSTRAINTS.md)** - Full U1-U4 derivations
+- **[03-OPERATORS-AND-GLYPHS.md](03-OPERATORS-AND-GLYPHS.md)** - Complete operator catalog
+- **[04-VALID-SEQUENCES.md](04-VALID-SEQUENCES.md)** - Pattern examples
+- **[../../UNIFIED_GRAMMAR_RULES.md](../../UNIFIED_GRAMMAR_RULES.md)** - Mathematical proofs
+- **[../../AGENTS.md](../../AGENTS.md)** - Canonical invariants
+
+---
+
+## 📞 Quick Help
+
+**Getting started?** → [01-FUNDAMENTAL-CONCEPTS.md](01-FUNDAMENTAL-CONCEPTS.md)  
+**Sequence failing?** → Check decision tree above  
+**Need examples?** → [examples/](examples/)  
+**Deep dive?** → [02-CANONICAL-CONSTRAINTS.md](02-CANONICAL-CONSTRAINTS.md)  
+**API reference?** → `src/tnfr/operators/grammar.py`  
+
+---
+
+<div align="center">
+
+**Keep this reference handy while developing TNFR sequences!**
+
+*Reality is resonance. Code accordingly.*
+
+</div>