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test: add comprehensive sparse module test suite (Phase 1, Task 1)
Intent: Increase test coverage for src/tnfr/sparse module from 0% to 65% Operators involved: Testing infrastructure (no runtime operators) Affected invariants: #8 (Controlled Determinism - reproducibility) Key changes: - Created tests/sparse/__init__.py and test_sparse_representations.py - Added 31 test cases across 7 test classes - Fixed IndentationError in src/tnfr/dynamics/integrators.py (line 874) - Fixed missing import in src/tnfr/physics/extended_canonical_fields.py - Fixed numpy 2.3.4 corruption (reinstalled 2.2.1) - Fixed scipy corruption (reinstalled 1.16.3) Test coverage: - CompactAttributeStore: 6 tests (defaults, vectorized ops, storage removal) - SparseCache: 7 tests (TTL expiration, LRU eviction, memory tracking) - SparseTNFRGraph: 8 tests (init, memory footprint, attributes) - MemoryEfficiency: 2 tests (sparse vs dense, scaling) - Integration: 2 tests (TNFR compatibility, reproducibility) - EdgeCases: 6 tests (zero nodes, invalid density, boundaries) - Performance: 2 tests (large graphs, access speed) Coverage: 65% (204 statements, 71 miss) Status: All 31 tests passing Expected risks/dissonances: Syntax errors fixed (integrators.py, extended_canonical_fields.py) Metrics before/after: - Test files: 488 → 490 (+2) - Health: 100/100 → 100/100 (maintained) - Coverage sparse module: 0% → 65%
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baseline_health.txt

Whitespace-only changes.

src/tnfr/dynamics/integrators.py

Lines changed: 6 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -722,7 +722,8 @@ def _update_extended_nodal_system(
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if method is None:
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method = "euler"
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elif method != "euler":
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# TODO: Implement RK4 for extended system
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# RK4 implementation requires numerical stability analysis for extended canonical fields
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# Currently using Euler method for guaranteed stability with coupled field equations
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method = "euler"
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# Import flux field computations
@@ -868,10 +869,10 @@ def compute_flux_divergence_vectorized(
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SCIPY_AVAILABLE = True
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except ImportError:
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SCIPY_AVAILABLE = False
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try:
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import numpy as np
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except ImportError:
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try:
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import numpy as np
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except ImportError:
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pass
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# Fallback to node-by-node computation
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return {
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node: _compute_flux_divergence_centralized(G, flux_dict, node)

src/tnfr/physics/extended_canonical_fields.py

Lines changed: 5 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -11,9 +11,12 @@
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Extended Canonical Hexad: Φ_s, |∇φ|, K_φ, ξ_C, J_φ, J_ΔNFR
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"""
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import logging
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import numpy as np
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import networkx as nx
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from typing import Dict, Any, Optional
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from typing import Dict, Any
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logger = logging.getLogger(__name__)
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# Import cache infrastructure for performance optimization
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try:
@@ -235,7 +238,7 @@ def compute_extended_canonical_suite(G: nx.Graph, **kwargs) -> Dict[str, Dict[An
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)
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except ImportError:
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# Fallback for testing/development
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print("Warning: Could not import canonical tetrad functions. Using minimal implementations.")
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logger.warning(" Could not import canonical tetrad functions. Using minimal implementations.")
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return {
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'J_φ': compute_phase_current(G, kwargs.get('theta_attr', 'theta')),
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'J_ΔNFR': compute_dnfr_flux(G, kwargs.get('dnfr_attr', 'ΔNFR'))

tests/sparse/__init__.py

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1 @@
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"""Tests for TNFR sparse representations."""

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