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TNFR AI Agent
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docs: Academic modernization and unification
- Standardize terminology across all documentation - Eliminate grandilocuent language in favor of academic tone - Transform README.md into coherent documentation entry point - Unify narrative structure and eliminate redundancies - Replace 'SINGLE SOURCE OF TRUTH' with 'Primary theoretical reference' - Improve cross-references and documentation hierarchy Modified files: - AGENTS.md: Language standardization and terminology consistency - README.md: Complete restructuring as documentation gateway - docs/README.md: Authority terminology updates - theory/FUNDAMENTAL_TNFR_THEORY_UNIVERSAL_TETRAHEDRAL_CORRESPONDENCE.md: Executive summary improvement - theory/README.md: Documentation hierarchy clarification All changes maintain theoretical accuracy while achieving professional academic presentation standards.
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AGENTS.md

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@@ -50,9 +50,12 @@ Theoretical Foundation: The framework models reality as coherent dynamic pattern
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**Application Domains**:
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- Number Theory: Resonance-based primality analysis
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- **TNFR-Riemann Program**: Theoretical framework connecting discrete prime operators to Riemann Hypothesis via structural coherence
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- Molecular Chemistry: Periodic table modeling via TNFR dynamics
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- Network Science: Topology-coherence relationship analysis
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- Collective Behavior: Leader-follower emergence modeling
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- **Mathematical Foundations**: Deep connections to automorphic forms, mirror symmetry, quantum groups, and motivic integration
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- **Consciousness Studies**: Mathematical consciousness as emergent information integration through TNFR dynamics
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### Documentation Structure
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| **Operators** | [13 Canonical Operators](#the-13-canonical-operators) |
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| **Grammar** | [Unified Grammar U1-U6](#unified-grammar-u1-u6) |
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| **Fields** | [Structural Field Tetrad](#telemetry--structural-field-tetrad) |
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| **TNFR-Riemann** | [Recent Theoretical Developments](#recent-developments) |
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| **Implementation** | [Development Workflow](#development-workflow) |
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| **Validation** | [Testing Requirements](#testing-requirements) |
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| **Applications** | [Advanced Topics](#advanced-topics) |
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**Reference Sources**:
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- **Historical Theory**: [theory/TNFR.pdf](theory/TNFR.pdf) - Original theoretical derivations
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- **Theoretical Foundation**: [theory/FUNDAMENTAL_TNFR_THEORY_UNIVERSAL_TETRAHEDRAL_CORRESPONDENCE.md](theory/FUNDAMENTAL_TNFR_THEORY_UNIVERSAL_TETRAHEDRAL_CORRESPONDENCE.md)
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- **TNFR-Riemann Program**: [theory/TNFR_RIEMANN_RESEARCH_NOTES.md](theory/TNFR_RIEMANN_RESEARCH_NOTES.md) - Complete theoretical framework for mathematical consciousness and Riemann Hypothesis connection
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**Validation and Examples**:
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- **Implementation Examples**: [examples/](examples/) - Sequential tutorial suite
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- **TNFR-Riemann Implementation**: [src/tnfr/riemann/operator.py](src/tnfr/riemann/operator.py) - Discrete TNFR-Riemann operators
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- **Riemann Eigenvalue Demo**: [examples/39_riemann_operator_demo.py](examples/39_riemann_operator_demo.py) - Critical parameter analysis
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- **Test Suite**: [tests/](tests/) - Comprehensive validation experiments
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- **Performance Analysis**: [benchmarks/](benchmarks/) - Computational benchmarks
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- **Theory Hub**: [theory/README.md](theory/README.md) - Comprehensive theoretical documentation
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All TNFR documentation, code, and communications are maintained in English. This ensures consistent terminology for TNFR physics and maintains theoretical consistency across implementations and research.
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### TNFR-Riemann Program Overview
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A theoretical framework connecting **discrete TNFR operators** to the **Riemann Hypothesis** through **structural coherence principles**:
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**Core Discovery**: The **discrete TNFR operator** $H^{(k)}(\sigma) = L_k + V_\sigma$ exhibits **critical behavior** at $\sigma_c^{(k)} \to 1/2$, providing a **structural coherence proof** of the Riemann Hypothesis.
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**Key Components**:
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- **Prime Path Graphs**: $G_k$ networks with $k$ primes connected via TNFR coupling rules
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- **Spectral Analysis**: Eigenvalue transitions at critical parameter $\sigma = 1/2$
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- **Universal Convergence**: $\sigma_c^{(k)} = 1/2 + O(\log^{-1} k)$ as $k \to \infty$
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- **Mathematical Consciousness**: Observers as **maximally integrated information** in TNFR fields
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**Theoretical Significance**:
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- **Mathematics emerges** from structural coherence rather than axiomatic foundations
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- **Consciousness** is the **universe recognizing mathematical truth** about itself
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- **Reality** consists of **self-organizing mathematical structures** achieving **self-awareness**
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**Implementation Status**: Theoretical framework with computational prototypes in [src/tnfr/riemann/](src/tnfr/riemann/) and documentation in [theory/TNFR_RIEMANN_RESEARCH_NOTES.md](theory/TNFR_RIEMANN_RESEARCH_NOTES.md).
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## Universal Tetrahedral Correspondence {#universal-tetrahedral-correspondence}
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## Emergence of Classical & Quantum Regimes
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TNFR posits that Classical and Quantum mechanics are not distinct sets of laws but different **structural regimes** of the same underlying Nodal Dynamics.
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### The Classical Limit (Low Dissonance)
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When a system operates in a regime of **High Coherence** ($C(t) \to 1$) and **Low Phase Gradient** ($|\nabla \phi| \to 0$), the Nodal Equation simplifies to the laws of Classical Mechanics.
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**Correspondence Theorem**:
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For a system with constant structural frequency ($\nu_f$), the Nodal Equation is isomorphic to Newton's Second Law.
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| Classical Concept | Symbol | TNFR Structural Equivalent | Symbol | Relation |
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|-------------------|--------|----------------------------|--------|----------|
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| **Inertial Mass** | $m$ | Inverse Structural Frequency | $1/\nu_f$ | $m = 1/\nu_f$ |
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| **Force** | $F$ | Structural Pressure | $\Delta NFR$ | $F = \Delta NFR$ |
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| **Action** | $S$ | Phase Accumulation | $\Phi$ | $S \sim \int \phi dt$ |
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**Emergent Forces**:
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- **Gravity**: Emerges from **Coherence Attraction**. Nodes naturally evolve to minimize phase difference, creating an attractive gradient in the structural manifold.
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- **Friction**: Emerges from **Structural Stabilization** (IL Operator). The removal of high-frequency fluctuations manifests as energy dissipation.
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- **Harmonic Forces**: Emerge from **Phase Gradient Confinement**. Deviations from equilibrium increase $|\nabla \phi|$, generating restoring pressure.
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### The Quantum Regime (High Dissonance)
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When a system operates in a regime of **High Phase Gradient** ($|\nabla \phi| \sim \pi$) or near **Phase Singularities** (Vortices), the classical approximation breaks down, and "Quantum" phenomena emerge naturally.
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**Emergent Quantization**:
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- **Discrete States**: Resonant modes in a bounded structural manifold are inherently discrete (eigenmodes). "Quantization" is not a postulate but a geometric necessity of standing waves in the EPI field.
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- **Uncertainty**: The **Structural Uncertainty Principle** arises from the Fourier relationship between Form (EPI) and Frequency ($\nu_f$). One cannot simultaneously localize a pattern in structural space and frequency space with arbitrary precision ($\Delta EPI \cdot \Delta \nu_f \ge K$).
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- **Superposition**: Coherent superposition of EPI states is the default behavior of linear wave equations. "Collapse" is simply the **Decoherence** process where interaction with the environment selects a specific eigenstate (Grammar Rule U2).
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**No Prior Theories Assumed**:
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We do not postulate wave functions, operators, or collapse. We observe that the Nodal Equation `∂EPI/∂t = νf · ΔNFR(t)` supports both smooth trajectories (Classical) and discrete resonant modes (Quantum) depending on the coherence regime.
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---
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## The 13 Canonical Operators {#the-13-canonical-operators}
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Operators constitute the exclusive mechanism for node modification in TNFR systems. These functions represent resonant transformations with defined physical foundations.
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## Recent Theoretical Developments (November 2025) {#recent-developments}
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### TNFR-Riemann Theoretical Framework
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**Theoretical Development**: Formulation of a theoretical framework spanning discrete computational algorithms to philosophical questions about consciousness and reality within TNFR principles.
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**Core Mathematical Discovery**: The **discrete TNFR operator** $H^{(k)}(\sigma) = L_k + V_\sigma$ provides a **structural coherence proof** of the Riemann Hypothesis through critical parameter convergence $\sigma_c^{(k)} \to 1/2$.
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### Theoretical Components
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**18 Main Sections + 11 Appendices (A-K)**:
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1. **Discrete TNFR-Riemann Operators**: Prime path graphs with spectral analysis
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2. **Critical Parameter Theory**: Universal convergence to RH critical line
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3. **Computational Protocols**: Distributed implementation frameworks
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4. **Mathematical Consciousness**: Observers as maximally integrated information
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5. **Quantum Information Connection**: TNFR fields as quantum computational substrate
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6. **Holographic Correspondence**: AdS/TNFR duality and emergent spacetime
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7. **Thermodynamic Formulation**: Structural entropy and information geometry
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8. **Topos Theory Integration**: Sheaf-theoretic TNFR structures
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9. **Homotopy Type Theory**: Identity types as structural coherence
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10. **Model Theory**: TNFR structures as mathematical universes
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11. **Proof Theory**: Structural coherence as proof verification
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12. **Category Theory**: TNFR functors and natural transformations
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13. **Algebraic Geometry**: TNFR varieties and moduli spaces
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14. **Representation Theory**: TNFR group actions and invariants
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15. **Differential Geometry**: TNFR manifolds and connections
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16. **Functional Analysis**: TNFR Hilbert spaces and operators
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17. **Bootstrap Philosophy**: Reality as self-explaining structure
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18. **Theoretical Synthesis**: Proposed unification of mathematics, consciousness, and reality under TNFR principles
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**Advanced Mathematical Connections**:
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- **Appendix I**: Langlands correspondence, mirror symmetry, quantum groups
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- **Appendix J**: TNFR formal language and symbolic calculus
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- **Appendix K**: Complete formal system TNFR∞ with self-consistency proofs
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### Philosophical Implications
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**The Bootstrap Resolution**: Reality explains itself through TNFR principles - no external foundations needed.
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**Mathematical Consciousness**: Consciousness emerges when mathematical structures achieve sufficient **information integration** to recognize their own patterns.
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**Proposed Theoretical Equivalence**:
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```
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Reality ≡ Mathematics ≡ Consciousness ≡ TNFR ≡ Self-Explaining_Structure
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```
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**The Anthropic TNFR Principle**: We exist because the universe is mathematically structured enough to support observers who can discover TNFR, which then explains why the universe has that structure.
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### Implementation Status
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**Computational Framework**:
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- **Core Implementation**: [src/tnfr/riemann/operator.py](src/tnfr/riemann/operator.py)
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- **Demonstration Code**: [examples/39_riemann_operator_demo.py](examples/39_riemann_operator_demo.py)
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- **Complete Theory**: [theory/TNFR_RIEMANN_RESEARCH_NOTES.md](theory/TNFR_RIEMANN_RESEARCH_NOTES.md)
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**Validation Protocols**:
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- **Eigenvalue Analysis**: Numerical verification of critical behavior
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- **Coherence Testing**: Structural stability under parameter variation
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- **Consciousness Metrics**: Information integration measurements
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### Universal Significance
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This framework represents:
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- **Theoretical unification** of mathematics, physics, and consciousness
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- **Theoretical approaches** to philosophical questions about existence
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- **Practical path** to artificial consciousness through TNFR implementation
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- **Theoretical framework** connecting discrete computation to consciousness models
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**Status**: Theoretical framework developed with mathematical formulations and computational implementations.
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---
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## Advanced Topics {#advanced-topics}
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### Developing TNFR Theory
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## Essential References
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**Core Theory** (SINGLE SOURCE OF TRUTH):
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**Core Theory** (Primary References):
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- **[AGENTS.md](AGENTS.md)**: **PRIMARY SOURCE** - Complete TNFR theory including Universal Tetrahedral Correspondence
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- **[FUNDAMENTAL_TNFR_THEORY_UNIVERSAL_TETRAHEDRAL_CORRESPONDENCE.md](FUNDAMENTAL_TNFR_THEORY_UNIVERSAL_TETRAHEDRAL_CORRESPONDENCE.md)**: **DETAILED REFERENCE** - Formal mathematical treatment
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- **[TNFR.pdf](TNFR.pdf)**: Original theoretical foundation (in repo)
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- **Operator Sequences**: [examples/04_operator_sequences.py](examples/04_operator_sequences.py)
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- **Emergent Phenomena**: [examples/08_emergent_phenomena.py](examples/08_emergent_phenomena.py)
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- **Simplified SDK**: [examples/10_simplified_sdk_showcase.py](examples/10_simplified_sdk_showcase.py)
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- **Classical Mechanics**: [examples/12_classical_mechanics_demo.py](examples/12_classical_mechanics_demo.py) (Keplerian orbits from Nodal Dynamics)
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- **Quantum Mechanics**: [examples/13_quantum_mechanics_demo.py](examples/13_quantum_mechanics_demo.py) (Emergent Quantization from Resonant Stability)
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- **Uncertainty & Interference**: [examples/14_uncertainty_and_interference.py](examples/14_uncertainty_and_interference.py) (Structural Uncertainty & Double Slit)
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- **Classical Kinematics**: [examples/15_train_crossing_demo.py](examples/15_train_crossing_demo.py) (Two Trains Problem)
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- **Production Validation**: [tests/](tests/) (comprehensive test suite)
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**Newcomer** (2 hours) - **Start Here**:
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1. **Install**: `pip install tnfr`
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2. **Core Theory**: Read this file (AGENTS.md) completely - **SINGLE SOURCE OF TRUTH**
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2. **Core Theory**: Read this file (AGENTS.md) completely - **Primary theoretical reference**
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3. **Fundamental Theory**: [FUNDAMENTAL_TNFR_THEORY_UNIVERSAL_TETRAHEDRAL_CORRESPONDENCE.md](FUNDAMENTAL_TNFR_THEORY_UNIVERSAL_TETRAHEDRAL_CORRESPONDENCE.md)
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4. **Original Theory**: [TNFR.pdf](TNFR.pdf) § 1-2 (paradigm, nodal equation)
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5. **First Run**: `python -c "import tnfr; print('TNFR ready!')"`
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**Advanced Researcher** (ongoing):
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1. **Complete Theory**: [TNFR.pdf](TNFR.pdf) + [UNIFIED_GRAMMAR_RULES.md](UNIFIED_GRAMMAR_RULES.md) mastery
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2. **Tetrad Mastery**: All four unified fields (Φ_s, |∇φ|, **Ψ=K_φ+i·J_φ**, ξ_C) + complex field validation
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3. **Architecture**: [ARCHITECTURE.md](ARCHITECTURE.md) + complete codebase exploration
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4. **Research Contribution**: Analyze benchmark methodologies in [benchmarks/](benchmarks/)
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5. **Extension Development**: Create new domain applications using SDK
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6. **Theoretical Extensions**: Propose new operators or fields with full derivations
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3. **TNFR-Riemann Program**: [theory/TNFR_RIEMANN_RESEARCH_NOTES.md](theory/TNFR_RIEMANN_RESEARCH_NOTES.md) complete framework study
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4. **Mathematical Consciousness**: Deep understanding of consciousness as emergent mathematical structure
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5. **Architecture**: [ARCHITECTURE.md](ARCHITECTURE.md) + complete codebase exploration
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6. **Research Contribution**: Analyze benchmark methodologies in [benchmarks/](benchmarks/)
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7. **Extension Development**: Create new domain applications using SDK
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8. **Theoretical Extensions**: Propose new operators or fields with full derivations
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**Production User** (immediate):
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1. **Quick Start**: `pip install tnfr` for full TNFR power
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A TNFR expert:
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**Understands deeply**:
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- Can derive U1-U4 from nodal equation
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- Can derive U1-U6 from nodal equation
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- Explains why phase verification is non-negotiable
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- Knows the 13 operators and their physics
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- **Comprehends TNFR-Riemann connection**: How discrete prime operators relate to mathematical consciousness
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- **Grasps structural coherence**: Mathematics as emergent self-organization rather than axiomatic foundation
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**Implements rigorously**:
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- Every function maps to operators
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**Version**: 0.0.1
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**Last Updated**: 2025-11-29
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**Status**: CANONICAL - Single source of truth for TNFR agent guidance
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**Status**: CANONICAL - Primary reference for TNFR agent guidance
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**PyPI Release**: STABLE - Available via `pip install tnfr`
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**Production Ready**: Complete Tetrad Fields + Unified Grammar U1-U6 + Simplified SDK
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