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instructors/04-practical-tutors.qmd

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@@ -57,7 +57,7 @@ Generate disease trajectories of **infectious individuals** and **new infections
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- Social contact matrix
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- Age group of the infectious population
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- Disease parameters (basic reproduction number, pre infectious period, infectious period)
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- Disease parameters (basic reproduction number, pre-infectious period, infectious period)
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**Steps:**
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Within your room, Write your answers to these questions:
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- What are the time and size of the epidemic peak for *infectious individuals* in each age group? Use the table output.
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- Compare and describe the similarities and differences between these two outputs: the table with epidemic peak of *infectious individuals* across age groups, and the plot of *new infections* across age groups.
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- Compare and describe the similarities and differences between these two outputs: the table with the epidemic peak of *infectious individuals* across age groups, and the plot of *new infections* across age groups.
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- Compare: What differences do you observe compared to the outputs from other rooms (if available)?
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### Inputs
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| Parameter | Value | Notes |
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|---|---|---|
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| Age Limits | 0, 20, 40 | Age group cutoffs |
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| Infectious Population | 1 / 1,000,000 | 1 infectious individual per million people in Age group 20-40 |
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| Infectious Population | 1 / 1,000,000 | 1 infectious individual per million people in the Age group 20-40 |
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| Basic Reproduction Number | 1.46 | R₀ value for influenza |
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| Pre-infectious Period | 3 days | Incubation before becoming infectious |
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| Infectious Period | 7 days | Duration of infectiousness |
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| **Output** | **Paste below** |
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|---|---|
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| Plot of *all compartments* and age groups | |
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| Table of peak of *infectious* across age groups | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* across age groups | |
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Write your answers to the questions above:
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| **Output** | **Paste below** |
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|---|---|
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| Plot of *all compartments* and age groups | |
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| Table of peak of *infectious* across age groups | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* across age groups | |
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Write your answers to the questions above:
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| **Output** | **Paste below** |
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|---|---|
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| Plot of *all compartments* and age groups | |
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| Table of peak of *infectious* across age groups | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* across age groups | |
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Write your answers to the questions above:
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| **Output** | **Paste below** |
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|---|---|
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| Plot of *all compartments* and age groups | |
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| Table of peak of *infectious* across age groups | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* in the whole population | |
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Write your answers to the questions above:
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| **Output** | **Paste below** |
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|---|---|
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| Plot of *all compartments* and age groups | |
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| Table of peak of *infectious* across age groups | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* in the whole population | |
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Write your answers to the questions above:
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| **Output** | **Paste below** |
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|---|---|
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| Plot of *all compartments* and age groups | |
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| Table of peak of *infectious* across age groups | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* in the whole population | |
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Write your answers to the questions above:
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| **Output** | **Paste below** |
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|---|---|
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| Table of peak of *infectious* across age groups | |
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| Plot of *new infections* in the whole population comparing interventions | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* in the whole population, comparing interventions | |
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Write your answers to the questions above:
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| **Output** | **Paste below** |
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|---|---|
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| Table of peak of *infectious* across age groups | |
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| Plot of *new infections* in the whole population comparing interventions | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* in the whole population, comparing interventions | |
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Write your answers to the questions above:
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| **Output** | **Paste below** |
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|---|---|
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| Table of peak of *infectious* across age groups | |
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| Plot of *new infections* in the whole population comparing interventions | |
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| Table of peaks of *infectious individuals* across age groups | |
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| Plot of *new infections* in the whole population, comparing interventions | |
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Write your answers to the questions above:
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instructors/_welcome.qmd

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@@ -34,7 +34,7 @@ to [autocomplete package or function names](https://support.posit.co/hc/en-us/ar
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- [**R shortcuts**](https://positron.posit.co/keyboard-shortcuts.html#r-shortcuts) to
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- Insert the pipe operator (`%>%`) using `Ctrl/Cmd`+`Shift`+`M`,
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- Insert the assignment operator (`<-`) using `Alt/Option`+`-`, and
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- [Execute one line of code](https://docs.posit.co/ide/user/ide/guide/code/execution.html) or multiple lines connected by the pipe operator (`%>%`) by placing the cursor in the code of interest and pressing the `Ctrl`+`Enter`.
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- [Execute one line of code](https://docs.posit.co/ide/user/ide/guide/code/execution.html) or multiple lines connected by the pipe operator (`%>%`) by placing the cursor in the code of interest and pressing `Ctrl`+`Enter`.
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- **The `help()` function** or `?` operator to access the [function reference manual](https://www.r-project.org/help.html).
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If your local configuration was not possible to set up:

instructors/files/04-practical-tutors.md

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@@ -27,7 +27,7 @@ infections** across age groups using the following available inputs:
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- Social contact matrix
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- Age group of the infectious population
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- Disease parameters (basic reproduction number, pre infectious period,
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- Disease parameters (basic reproduction number, pre-infectious period,
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infectious period)
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**Steps:**
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- What are the time and size of the epidemic peak for *infectious
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individuals* in each age group? Use the table output.
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- Compare and describe the similarities and differences between these
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two outputs: the table with epidemic peak of *infectious individuals*
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across age groups, and the plot of *new infections* across age groups.
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two outputs: the table with the epidemic peak of *infectious
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individuals* across age groups, and the plot of *new infections*
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across age groups.
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- Compare: What differences do you observe compared to the outputs from
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other rooms (if available)?
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| Parameter | Value | Notes |
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|----|----|----|
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| Age Limits | 0, 20, 40 | Age group cutoffs |
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| Infectious Population | 1 / 1,000,000 | 1 infectious individual per million people in Age group 20-40 |
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| Infectious Population | 1 / 1,000,000 | 1 infectious individual per million people in the Age group 20-40 |
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| Basic Reproduction Number | 1.46 | R₀ value for influenza |
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| Pre-infectious Period | 3 days | Incubation before becoming infectious |
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| Infectious Period | 7 days | Duration of infectiousness |

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