Merge branch 'main' into issue#10425

* main: (46 commits)
  use the new syntax of ignoring bots (pydata#10668)
  modification methods on `Coordinates` (pydata#10318)
  Silence warnings from test_tutorial.py (pydata#10661)
  test: update write_empty test for zarr 3.1.2 (pydata#10665)
  Bump actions/checkout from 4 to 5 in the actions group (pydata#10652)
  Add load_datatree function (pydata#10649)
  Support compute=False from DataTree.to_netcdf (pydata#10625)
  Fix typos (pydata#10655)
  In case of misconfiguration of dataset.encoding `unlimited_dims` warn instead of raise (pydata#10648)
  fix ``auto_complex`` for ``open_datatree`` (pydata#10632)
  Fix bug indexing with boolean scalars (pydata#10635)
  Improve DataTree typing (pydata#10644)
  Update Cartopy and Iris references (pydata#10645)
  Empty release notes (pydata#10642)
  release notes for v2025.08.0 (pydata#10641)
  Fix `ds.merge` to prevent altering original object depending on join value (pydata#10596)
  Add asynchronous load method (pydata#10327)
  Add DataTree.prune() method              … (pydata#10598)
  Avoid refining parent dimensions in NetCDF files (pydata#10623)
  clarify lazy behaviour and eager loading chunks=None in open_*-functions (pydata#10627)
  ...

Author: dcherian

.github/release.yml

@@ -1,5 +1,5 @@
 changelog:
   exclude:
     authors:
-      - dependabot
-      - pre-commit-ci
+      - dependabot[bot]
+      - pre-commit-ci[bot]

.github/workflows/benchmarks-last-release.yml

@@ -17,7 +17,7 @@ jobs:
     steps:
       # We need the full repo to avoid this issue
       # https://github.com/actions/checkout/issues/23
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0
 

.github/workflows/benchmarks.yml

@@ -20,7 +20,7 @@ jobs:
     steps:
       # We need the full repo to avoid this issue
       # https://github.com/actions/checkout/issues/23
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0
 

.github/workflows/ci-additional.yaml

@@ -25,7 +25,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 2
       - uses: xarray-contrib/ci-trigger@v1
@@ -46,7 +46,7 @@ jobs:
       CONDA_ENV_FILE: ci/requirements/environment.yml
       PYTHON_VERSION: "3.12"
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
@@ -92,7 +92,7 @@ jobs:
       PYTHON_VERSION: "3.12"
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
@@ -143,7 +143,7 @@ jobs:
       PYTHON_VERSION: "3.11"
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
@@ -199,7 +199,7 @@ jobs:
       PYTHON_VERSION: "3.12"
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
@@ -255,7 +255,7 @@ jobs:
       PYTHON_VERSION: "3.11"
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 
@@ -307,7 +307,7 @@ jobs:
       COLUMNS: 120
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 

.github/workflows/ci.yaml

@@ -25,7 +25,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 2
       - uses: xarray-contrib/ci-trigger@v1
@@ -81,7 +81,7 @@ jobs:
             numprocesses: 1
             os: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
       - name: Set environment variables

.github/workflows/hypothesis.yaml

@@ -24,7 +24,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 2
       - uses: xarray-contrib/ci-trigger@v1
@@ -52,7 +52,7 @@ jobs:
       PYTHON_VERSION: "3.12"
 
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
 

.github/workflows/nightly-wheels.yml

@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
     if: github.repository == 'pydata/xarray'
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0
       - uses: actions/setup-python@v5

.github/workflows/pypi-release.yaml

@@ -20,7 +20,7 @@ jobs:
       startsWith(github.ref, 'refs/tags/v')
       ) }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0
       - uses: actions/setup-python@v5
@@ -62,7 +62,7 @@ jobs:
         name: Install Python
         with:
           python-version: "3.12"
-      - uses: actions/download-artifact@v4
+      - uses: actions/download-artifact@v5
         with:
           name: releases
           path: dist
@@ -89,7 +89,7 @@ jobs:
       id-token: write
 
     steps:
-      - uses: actions/download-artifact@v4
+      - uses: actions/download-artifact@v5
         with:
           name: releases
           path: dist
@@ -112,7 +112,7 @@ jobs:
       id-token: write
 
     steps:
-      - uses: actions/download-artifact@v4
+      - uses: actions/download-artifact@v5
         with:
           name: releases
           path: dist

.github/workflows/upstream-dev-ci.yaml

@@ -28,7 +28,7 @@ jobs:
     outputs:
       triggered: ${{ steps.detect-trigger.outputs.trigger-found }}
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 2
       - uses: xarray-contrib/ci-trigger@v1
@@ -57,7 +57,7 @@ jobs:
       matrix:
         python-version: ["3.12"]
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
       - name: Set up conda environment
@@ -113,7 +113,7 @@ jobs:
       matrix:
         python-version: ["3.11"]
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v5
         with:
           fetch-depth: 0 # Fetch all history for all branches and tags.
       - name: Set up conda environment

.pre-commit-config.yaml

@@ -24,7 +24,7 @@ repos:
       - id: rst-inline-touching-normal
       - id: text-unicode-replacement-char
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.12.2
+    rev: v0.12.7
     hooks:
       - id: ruff-check
         args: ["--fix", "--show-fixes"]
@@ -41,7 +41,7 @@ repos:
       - id: prettier
         args: [--cache-location=.prettier_cache/cache]
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.16.1
+    rev: v1.17.1
     hooks:
       - id: mypy
         # Copied from setup.cfg
@@ -72,9 +72,7 @@ repos:
     hooks:
       - id: validate-pyproject
         additional_dependencies: ["validate-pyproject-schema-store[all]"]
-  - repo: https://github.com/crate-ci/typos
-    rev: v1
+  - repo: https://github.com/adhtruong/mirrors-typos
+    rev: v1.34.0
     hooks:
       - id: typos
-        # https://github.com/crate-ci/typos/issues/347
-        pass_filenames: false