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ericjbohmebohm
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ci fixes bundle (#3871)
* bugfix: remove redundant shift after exit * bugfix: due to bugs in the ubuntu-latest install, use 20.04 * bugfix: switch to ubuntu24.04 for problematic ci targets * !fixup: use ubuntu 22.04 to fix ci failures found in ubuntu-latest * bugfix: avert ci failures by disabling ROMIO by default * bugfix: disable changa test until it can be fixed in ci * bugfix: switch to macos-13 to work around eternal runner wait * bugfix: switch macos builds to build-only because io_read test is failing. * bugfix: don't do spack matrix.os until we fix macos * bugfix: remove macos target from spack test * bugfix: reformat spack test * cleanup: note removal of spack macos test * cleanup: ROMIO off by default, but selectable at build time The challenges around ROMIO (i.e., GCC 14) and how to enable it are called out in the README.ampi file. * docs: ROMIO vs GCC 14 and --with-romio added to AMPI manual --------- Co-authored-by: Eric Bohm <ebohm@illinois.edu>
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.github/workflows/ci.yaml

Lines changed: 32 additions & 35 deletions
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@@ -24,22 +24,23 @@ jobs:
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run: make -C netlrts-linux-x86_64/tmp testp TESTOPTS="++local" P=3
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changa_netlrts-linux-x86_64:
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runs-on: ubuntu-latest
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- name: build-charm++
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run: ./build ChaNGa netlrts-linux-x86_64 -g -j4 --with-production
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- name: build-changa
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- name: build-only-changa
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run: |
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git clone https://github.com/N-bodyshop/utility
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git clone https://github.com/N-bodyshop/changa
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cd changa
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./configure
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make -j4
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- name: test-changa
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run: |
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cd changa/teststep
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make test
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# make changa test build only until someone can fix it
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# - name: test-changa
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# run: |
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# cd changa/teststep
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# make test
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charm4py_netlrts-linux-x86_64_tcp:
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runs-on: ubuntu-latest
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mpi-linux-x86_64:
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timeout-minutes: 90
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runs-on: ubuntu-latest
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runs-on: ubuntu-22.04 # ubuntu-latest does not work
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steps:
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- uses: actions/checkout@v4
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- name: install-prerequisites
@@ -117,7 +118,7 @@ jobs:
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mpi-linux-x86_64_syncft:
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timeout-minutes: 90
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runs-on: ubuntu-latest
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runs-on: ubuntu-22.04 # ubuntu-latest does not work
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steps:
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- uses: actions/checkout@v4
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- name: install-prerequisites
@@ -129,24 +130,24 @@ jobs:
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multicore-darwin-x86_64_projections:
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timeout-minutes: 60
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runs-on: macos-12
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runs-on: macos-13
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steps:
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- uses: actions/checkout@v4
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- name: build
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- name: build-only
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run: ./build LIBS multicore-darwin-x86_64 -g -j3 --with-production --enable-tracing
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- name: test
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run: |
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make -C multicore-darwin-x86_64/tmp all-test -j3 OPTS="-g -tracemode projections"
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make -C multicore-darwin-x86_64/tmp test
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- name: projections
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# - name: test
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# run: |
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# make -C multicore-darwin-x86_64/tmp all-test -j3 OPTS="-g -tracemode projections"
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# make -C multicore-darwin-x86_64/tmp test
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- name: projections-build-only
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run: |
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git clone https://github.com/UIUC-PPL/projections
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cd projections
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make
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proj=$PWD/bin/projections
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cd ..
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files=$(find . -name *.sts)
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for f in $files; do echo $f; pushd .; cd $(dirname $f); $proj --exit $(basename $f); popd; done
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# proj=$PWD/bin/projections
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# cd ..
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# files=$(find . -name *.sts)
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# for f in $files; do echo $f; pushd .; cd $(dirname $f); $proj --exit $(basename $f); popd; done
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# FIXME: disabled since tests don't pass
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# multicore-darwin-arm8_projections:
@@ -228,18 +229,19 @@ jobs:
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cd ../namd/Linux-x86_64-g++
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./charmrun ++local +p4 ./namd3 ~/namddata/apoa1/apoa1.namd
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# FIXME: darwin tests all fail
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netlrts-darwin-x86_64:
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timeout-minutes: 60
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runs-on: macos-12
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runs-on: macos-13
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steps:
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- uses: actions/checkout@v4
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- name: build
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- name: build-only
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run: ./build all-test netlrts-darwin-x86_64 --build-shared --with-production --enable-error-checking --enable-lbuserdata -j3 -g -Werror=vla
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# TODO: this should build tests with "-charm-shared". See #2735 on why this is not done currently.
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- name: test
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run: make -C netlrts-darwin-x86_64/tmp test TESTOPTS="++local"
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- name: testp P=2
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run: make -C netlrts-darwin-x86_64/tmp testp P=2 TESTOPTS="++local"
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# - name: test
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# run: make -C netlrts-darwin-x86_64/tmp test TESTOPTS="++local"
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# - name: testp P=2
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# run: make -C netlrts-darwin-x86_64/tmp testp P=2 TESTOPTS="++local"
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# FIXME: disabled since tests don't pass
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# netlrts-darwin-arm8:
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src/arch/multicore/charmrun \
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src/arch/mpi-win-x86_64/charmrun \
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spack:
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name: spack_${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-latest, macos-12]
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spack_ubuntu-latest:
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#removed macos target and branch protection until macos ci testing is fixed
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runs-on: ubuntu-latest
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timeout-minutes: 60
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steps:
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- uses: actions/checkout@v4
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- name: Install Spack
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ucx-linux-x86_64_openpmix:
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timeout-minutes: 60
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runs-on: ubuntu-latest
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runs-on: ubuntu-22.04
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steps:
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- uses: actions/checkout@v1
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# Uncomment the lines below to set up a tmate session for debugging.

CMakeLists.txt

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@@ -596,10 +596,10 @@ if(NOT CMK_AMPI_ONLY)
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set(CMK_AMPI_ONLY 0)
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endif()
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#disable ROMIO due to GCC 14 cascade of failures
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if(NOT DEFINED CMK_AMPI_WITH_ROMIO)
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set(CMK_AMPI_WITH_ROMIO 1)
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endif()
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set(CMK_AMPI_WITH_ROMIO 0)
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endif()
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set(CMK_ENABLE_C11 ${CMAKE_C11_EXTENSION_COMPILE_OPTION})
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# Use -std=gnu++11 if available

README.ampi

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@@ -92,5 +92,10 @@ prefixed with AMPI_:
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* AMPI_Get_command_argument returns an argument from the command line
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to a Fortran AMPI program.
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95+
MPI-IO is support is available via our port of the ROMIO library. however:
96+
* ROMIO is not built by default due to the fact that the current port is
97+
incompatible with GCC 14 and beyond. Add --with-romio to your
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build line to enable MPI-IO support via ROMIO.
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Note that AMPI defines a preprocessor symbol "AMPI" so that user codes can
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check for AMPI's presence at compile time using "#ifdef AMPI".

buildcmake

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@@ -144,13 +144,13 @@ opt_tracing= #undef
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opt_tracing_commthread=0
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opt_zlib=1
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# default to building ROMIO on AMPI where supported
147+
# default to not building ROMIO on AMPI due to GCC 14 cascade failures
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case "$actual_triplet" in
149149
*-win-*)
150150
opt_romio=0
151151
;;
152152
*)
153-
opt_romio=1
153+
opt_romio=0
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;;
155155
esac
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buildold

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@@ -270,13 +270,13 @@ shift
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OPT_DIRS=("$src/$BASEVERSION" "$src/$ARCH" "$src/common")
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# default to building ROMIO on AMPI where supported
273+
# default to not building ROMIO due to GCC 14 cascade failures
274274
case "$BASEVERSION" in
275275
*-win-*)
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WITH_ROMIO=''
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;;
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*)
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WITH_ROMIO='true'
279+
WITH_ROMIO=''
280280
;;
281281
esac
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doc/ampi/01-introduction.rst

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@@ -204,8 +204,12 @@ MPI Standards Compliance
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Currently AMPI supports the MPI-2.2 standard, with preliminary support
206206
for most MPI-3.1 features and a collection of extensions explained in
207-
detail in this manual. One-sided communication calls in MPI-2 and MPI-3
208-
are implemented, but they do not yet take advantage of RMA features.
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Non-blocking collectives have been defined in AMPI since before
210-
MPI-3.0’s adoption of them. ROMIO (http://www-unix.mcs.anl.gov/romio/) has been integrated into
211-
AMPI to support parallel I/O features.
207+
detail in this manual. One-sided communication calls in MPI-2 and
208+
MPI-3 are implemented, but they do not yet take advantage of RMA
209+
features. Non-blocking collectives have been defined in AMPI since
210+
before MPI-3.0’s adoption of them. ROMIO
211+
(http://www-unix.mcs.anl.gov/romio/) has been integrated into AMPI to
212+
support parallel I/O features. However, ROMIO is not enabled by
213+
default due to incompatibility with the strict requirements of GCC 14
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(and above). Add --with-romio to the build line and use a more
215+
permissive compiler than GCC 14 to enable the ROMIO based I/O features.

src/arch/multicore/charmrun

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@@ -40,7 +40,6 @@ do
4040
+n[0-9]*)
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printf "Charmrun> Error: Multicore builds only support single-node runs.\n"
4242
exit 1
43-
shift
4443
;;
4544
++quiet)
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QUIET=1

src/libs/ck-libs/ampi/CMakeLists.txt

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@@ -1,6 +1,11 @@
11
set(ampi-cxx-sources ampi.C ampiMisc.C ampiOneSided.C ampif.C ddt.C mpich-alltoall.C ampi_mpix.C ampi_noimpl.C)
22

33
set(ampi-f90-sources ampimod.f90)
4+
#disable ROMIO due to GCC 14 cascade of failures
5+
if(NOT DEFINED CMK_AMPI_WITH_ROMIO)
6+
set(CMK_AMPI_WITH_ROMIO 0)
7+
endif()
8+
49

510
set(ampi-h-sources ampi.h ampi-interoperate.h ampiimpl.h ddt.h ampi_functions.h ampi_funcptr.h ampi_funcptr_loader.h
611
romio-stub/mpio_globals.h)
@@ -180,6 +185,7 @@ endif()
180185

181186
# ROMIO
182187
set(romio-objects)
188+
183189
if(CMK_AMPI_WITH_ROMIO)
184190
set(romio_dir ${CMAKE_BINARY_DIR}/src/libs/ck-libs/ampi/romio-prefix/src/romio)
185191

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