polars-bio-workshop

Prerequisites

• Python >=3.9<3.14 (preferably 3.12+)
• uv or another Python package/environment manager
• wget
• gsutil
• gzip and bgzip, e.g. brew install htslib
• Linux/macOS/Windows (preferably Linux or macOS)
• Internet connection (for downloading files)

Setup the environment

uv venv
source .venv/bin/activate
uv pip install -r pyproject.toml

Check installation

python -c "import polars_bio; print(polars_bio.__version__)"

Run notebooks

uv run jupyter-lab notebook