What python version did you guys use for this project? #12
Description
Using your script it seems that I can't install the following torch version that's been specified with cpu tag
pip install torch==1.11.0+cpu torchvision==0.12.0+cpu torchaudio==0.11.0 --extra-index-url https://download.pytorch.org/whl/cpu
but if I change it to:
pip install torch==1.11.0 torchvision==0.12.0 torchaudio==0.11.0 --extra-index-url https://download.pytorch.org/whl/cpu
Then it's okay.
The pip list:
$ pip list
Package Version
certifi 2022.12.7
charset-normalizer 3.4.1
clang 6.0.0.2
idna 3.10
Jinja2 3.1.5
joblib 1.3.2
MarkupSafe 2.1.5
numpy 1.21.6
pandas 1.3.5
Pillow 9.5.0
pip 22.3.1
psutil 6.1.1
pyparsing 3.1.4
python-dateutil 2.9.0.post0
pytz 2024.2
requests 2.31.0
scikit-learn 1.0.2
scipy 1.7.3
setuptools 65.6.3
six 1.17.0
threadpoolctl 3.1.0
torch 1.11.0
torch-cluster 1.6.1
torch-geometric 2.3.1
torch-scatter 2.1.1
torch-sparse 0.6.17
torch-spline-conv 1.2.2
torchaudio 0.11.0
torchvision 0.12.0
tqdm 4.67.1
typing_extensions 4.7.1
urllib3 2.0.7
wheel 0.38.4
And the error I get on the last stage.
$ python3 test.py
Traceback (most recent call last):
File "test.py", line 6, in
from torch_geometric.data import Data
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_geometric/init.py", line 1, in
import torch_geometric.utils
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_geometric/utils/init.py", line 3, in
from .scatter import scatter
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_geometric/utils/scatter.py", line 7, in
import torch_geometric.typing
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_geometric/typing.py", line 37, in
import torch_sparse # noqa
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_sparse/init.py", line 40, in
from .tensor import SparseTensor # noqa
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_sparse/tensor.py", line 13, in
class SparseTensor(object):
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch/jit/_script.py", line 1302, in script
_compile_and_register_class(obj, _rcb, qualified_name)
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch/jit/_recursive.py", line 44, in _compile_and_register_class
script_class = torch._C._jit_script_class_compile(qualified_name, ast, defaults, rcb)
RuntimeError:
object has no attribute sparse_csc_tensor:
File "/home/parallels/anaconda3/envs/graphspd/lib/python3.7/site-packages/torch_sparse/tensor.py", line 520
value = torch.ones(self.nnz(), dtype=dtype, device=self.device())
return torch.sparse_csc_tensor(colptr, row, value, self.sizes())
~~~~~~~~~~~~~~~~~~~~~~~ <--- HERE
I tried using different python versions such as python 3.8,9,10 and I get new different erros! for example 3.10 gives me error
$ python3 test.py
/home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/typing.py:86: UserWarning: An issue occurred while importing 'torch-scatter'. Disabling its usage. Stacktrace: /home/parallels/anaconda3/envs/graphspd3.10/bin/../lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_scatter/_version_cpu.so) warnings.warn(f"An issue occurred while importing 'torch-scatter'. " /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/typing.py:97: UserWarning: An issue occurred while importing 'torch-cluster'. Disabling its usage. Stacktrace: /home/parallels/anaconda3/envs/graphspd3.10/bin/../lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_cluster/_version_cpu.so)
warnings.warn(f"An issue occurred while importing 'torch-cluster'. "
/home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/typing.py:113: UserWarning: An issue occurred while importing 'torch-spline-conv'. Disabling its usage. Stacktrace: /home/parallels/anaconda3/envs/graphspd3.10/bin/../lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_spline_conv/_version_cpu.so) warnings.warn( /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/typing.py:124: UserWarning: An issue occurred while importing 'torch-sparse'. Disabling its usage. Stacktrace: /home/parallels/anaconda3/envs/graphspd3.10/bin/../lib/libstdc++.so.6: version GLIBCXX_3.4.32' not found (required by /home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_sparse/_version_cpu.so)
warnings.warn(f"An issue occurred while importing 'torch-sparse'. "
Traceback (most recent call last):
File "/home/parallels/researchfolder/GraphSPD/test.py", line 6, in
from torch_geometric.data import Data
File "/home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/init.py", line 8, in
from .index import Index
File "/home/parallels/anaconda3/envs/graphspd3.10/lib/python3.10/site-packages/torch_geometric/index.py", line 461, in
@implements(aten.clone.default)
AttributeError: 'builtin_function_or_method' object has no attribute 'default'
So at this point I'm doubting maybe it's because of the modified line I've done in the script which is as follows:
sudo ln -s /usr/lib/aarch64-linux-gnu/libclang-*.so.1 /usr/lib/aarch64-linux-gnu/libclang.so
since i'm on arm based mac needed to modify the link...
but what's this mess.... @ . @