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[pre-commit.ci] auto fixes from pre-commit.com hooks
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monailabel/datastore/utils/convert_htj2k.py

Lines changed: 6 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1102,15 +1102,15 @@ def convert_single_frame_dicom_series_to_multiframe(
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# CRITICAL: Remove top-level ImagePositionPatient and ImageOrientationPatient
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# Working files (that display correctly in OHIF MPR) have NEITHER at top level
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# These should ONLY exist in functional groups for Enhanced CT
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if hasattr(output_ds, "ImagePositionPatient"):
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delattr(output_ds, "ImagePositionPatient")
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logger.info(f" ✓ Removed top-level ImagePositionPatient (use per-frame only)")
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if hasattr(output_ds, "ImageOrientationPatient"):
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delattr(output_ds, "ImageOrientationPatient")
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logger.info(f" ✓ Removed top-level ImageOrientationPatient (use SharedFunctionalGroupsSequence only)")
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# CRITICAL: Set correct SOPClassUID for Enhanced multi-frame CT
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output_ds.SOPClassUID = "1.2.840.10008.5.1.4.1.1.2.1" # Enhanced CT Image Storage
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logger.info(f" ✓ Set SOPClassUID to Enhanced CT Image Storage")
@@ -1169,7 +1169,9 @@ def convert_single_frame_dicom_series_to_multiframe(
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else:
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# If missing, use default (0,0,frame_idx * spacing)
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# This shouldn't happen for valid CT series, but ensures MPR compatibility
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default_spacing = float(output_ds.SpacingBetweenSlices) if hasattr(output_ds, 'SpacingBetweenSlices') else 1.0
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default_spacing = (
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float(output_ds.SpacingBetweenSlices) if hasattr(output_ds, "SpacingBetweenSlices") else 1.0
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)
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plane_pos_item.ImagePositionPatient = [0.0, 0.0, frame_idx * default_spacing]
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logger.warning(f" Frame {frame_idx} missing ImagePositionPatient, using default")
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frame_item.PlanePositionSequence = Sequence([plane_pos_item])

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