Add the ability to show patient status information on the dashboard based on information entered (#317)

* Add ability to deploy patient flags via metadata deploy

* Changed patient flags to use the api module instead of the omod

* Changed role reference from a uuid to the name of the role

* Removed the tag evaluator since the default is an SQL Flag Evaluator

* Added patient flags as a required module

* Added the info message for module startup only when there are no exceptions

* Updated the module versions to the latest releases from Reference App 2.7 release train

* Added the first round of patient flags

* Updated to install available flags

* Enable the recent visits dashboard widget

* Update of DUE_FOR_FIRST_VIRAL_LOAD to enable additional queries for ANC

* Updated uicommons and core versions to fix issue with breaking dashboard widgets

* Added Exposed Infant and Viral Load patient flags

Author: ssmusoke

api/pom.xml

@@ -152,6 +152,11 @@
 			<artifactId>providermanagement-api</artifactId>
 		</dependency>
 
+		<dependency>
+			<groupId>org.openmrs.module</groupId>
+			<artifactId>patientflags-api</artifactId>
+		</dependency>
+
 		<dependency>
 			<groupId>org.openmrs.module</groupId>
 			<artifactId>registrationcore-api</artifactId>

api/src/main/java/org/openmrs/module/aijar/AijarActivator.java

@@ -30,6 +30,7 @@
 import org.openmrs.module.aijar.activator.Initializer;
 import org.openmrs.module.aijar.api.deploy.bundle.CommonMetadataBundle;
 import org.openmrs.module.aijar.api.deploy.bundle.UgandaAddressMetadataBundle;
+import org.openmrs.module.aijar.api.deploy.bundle.UgandaEMRPatientFlagMetadataBundle;
 import org.openmrs.module.aijar.metadata.core.PatientIdentifierTypes;
 import org.openmrs.module.appframework.service.AppFrameworkService;
 import org.openmrs.module.dataexchange.DataImporter;
@@ -102,7 +103,7 @@ public void started() {
             appFrameworkService.disableApp("coreapps.latestObsForConceptList");
             appFrameworkService.disableApp("coreapps.obsAcrossEncounters");
             appFrameworkService.disableApp("coreapps.obsGraph");
-            appFrameworkService.disableApp("coreapps.visitByEncounterType");
+            appFrameworkService.enableApp("coreapps.visitByEncounterType");
             appFrameworkService.disableApp("coreapps.dataIntegrityViolations");
 
             // enable the relationships dashboard widget
@@ -149,15 +150,15 @@ public void started() {
 
             // generate OpenMRS ID for patients without the identifier
             generateOpenMRSIdentifierForPatientsWithout();
-
+            log.info("aijar Module started");
 
         } catch (Exception e) {
             Module mod = ModuleFactory.getModuleById("aijar");
             ModuleFactory.stopModule(mod);
             throw new RuntimeException("failed to setup the module ", e);
         }
 
-        log.info("aijar Module started");
+
     }
 
     /**
@@ -331,35 +332,15 @@ private void installCommonMetadata(MetadataDeployService deployService) {
             deployService.installBundle(Context.getRegisteredComponents(UgandaAddressMetadataBundle.class).get(0));
             log.info("Finished installing addresshierarchy");
 
-            // retire concepts that are duplicated in the
-            // concept metadata package
-            /*ConceptService conceptService = Context.getConceptService();
-            List<String> conceptsToRetire = Arrays.asList("8b64f9e1-196a-4802-a287-fd160fb97002", // YES
-			        "b1629d9a-91a5-4895-b6bc-647f3a944534" // NO
-			        , "1065AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" // YES
-			        , "1066AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" // NO
-			        , "1067AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" // UNKNOWN
-			        , "1499AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"  // MODERATE
-			        , "1500AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"  // SEVERE
-			        , "1734AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA"  // YEARS
-			        , "111633AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" // URINARY TRACT INFECTION
-			        , "117543AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA" // HERPES ZOSTER
-	        );
-	        for (String uuid : conceptsToRetire) {
-		        Concept concept = conceptService.getConceptByUuid(uuid);
-		        if (concept != null) {
-			        // retire the concept
-			        log.info("Retiring concept " + concept.toString());
-			        conceptService.retireConcept(concept, "Duplicated in MDS import");
-			        log.info("Retired concept " + concept.toString());
-		        }
-	        }*/
-
             // install concepts
             log.info("Installing standard metadata using the packages.xml file");
             MetadataUtil.setupStandardMetadata(getClass().getClassLoader());
             log.info("Standard metadata installed");
 
+            log.info("Installing patient flags");
+            deployService.installBundle(Context.getRegisteredComponents(UgandaEMRPatientFlagMetadataBundle.class).get(0));
+            log.info("Finished installing patient flags");
+
         } catch (Exception e) {
             Module mod = ModuleFactory.getModuleById("aijar");
             ModuleFactory.stopModule(mod);

api/src/main/java/org/openmrs/module/aijar/api/deploy/bundle/CommonMetadataBundle.java

@@ -6,9 +6,7 @@
 import org.springframework.stereotype.Component;
 
 /**
- * Installs the most common metadata
- * <p/>
- * Created by ssmusoke on 06/01/2016.
+ * Installs the common metadata
  */
 @Component
 public class CommonMetadataBundle extends AbstractMetadataBundle {

api/src/main/java/org/openmrs/module/aijar/api/deploy/bundle/UgandaEMRPatientFlagMetadataBundle.java

@@ -0,0 +1,48 @@
+package org.openmrs.module.aijar.api.deploy.bundle;
+
+import org.openmrs.module.aijar.metadata.core.Flags;
+import org.openmrs.module.aijar.metadata.core.Priorites;
+import org.openmrs.module.aijar.metadata.core.Tags;
+import org.openmrs.module.metadatadeploy.bundle.AbstractMetadataBundle;
+import org.openmrs.module.patientflags.metadatadeploy.bundle.PatientFlagMetadataBundle;
+import org.springframework.stereotype.Component;
+
+
+/**
+ * Installs metadata for Patient Flags
+ */
+@Component
+public class UgandaEMRPatientFlagMetadataBundle extends PatientFlagMetadataBundle {
+
+    /**
+     * @see AbstractMetadataBundle#install()
+     */
+    public void install() throws Exception {
+        // Tags
+        log.info("Installing Patient flag tags");
+        install(Tags.PATIENT_STATUS);
+
+        // Priorites
+        log.info("Installing patient flag priorities");
+        install(Priorites.GREEN);
+        install(Priorites.RED);
+        install(Priorites.ORANGE);
+
+        // Flags
+        log.info("Installing flags");
+        install(Flags.DUE_FOR_FIRST_VIRAL_LOAD);
+        install(Flags.OVERDUE_FOR_FIRST_VIRAL_LOAD);
+        install(Flags.MISSED_APPOINTMENT);
+        install(Flags.UPCOMING_APPOINTMENT);
+        install(Flags.PATIENT_LOST);
+        install(Flags.PATIENT_LOST_TO_FOLLOWUP);
+        install(Flags.DUE_FOR_ROUTINE_VIRAL_LOAD);
+        install(Flags.OVERDUE_FOR_ROUTINE_VIRAL_LOAD);
+        install(Flags.DUE_FOR_FIRST_DNA_PCR);
+        install(Flags.OVERDUE_FOR_FIRST_DNA_PCR);
+        install(Flags.DUE_FOR_SECOND_DNA_PCR);
+        install(Flags.OVERDUE_FOR_SECOND_DNA_PCR);
+        install(Flags.DUE_FOR_RAPID_TEST);
+        install(Flags.OVERDUE_FOR_RAPID_TEST);
+    }
+}