update example scripts

Author: JBlaschke

Project.toml

@@ -0,0 +1,33 @@
+[deps]
+BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
+CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
+CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0"
+ChunkSplitters = "ae650224-84b6-46f8-82ea-d812ca08434e"
+ColorTypes = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
+Conda = "8f4d0f93-b110-5947-807f-2305c1781a2d"
+IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a"
+JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819"
+KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c"
+MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
+MPIPreferences = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267"
+OhMyThreads = "67456a42-1dca-4109-a031-0a68de7e3ad5"
+Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
+ProgressMeter = "92933f4c-e287-5a05-a399-4b506db050ca"
+ThreadPinning = "811555cd-349b-4f26-b7bc-1f208b848042"
+
+[compat]
+BenchmarkTools = "1.5"
+CUDA = "5.5"
+CairoMakie = "0.12"
+ChunkSplitters = "3.1"
+ColorTypes = "0.11"
+Conda = "1.10"
+IJulia = "1.25"
+KernelAbstractions = "=0.9.29"
+MPI = "0.20"
+MPIPreferences = "0.1"
+OhMyThreads = "0.7"
+Plots = "1.40"
+ProgressMeter = "1.10"
+ThreadPinning = "1.0"
+julia = "1.10"

exercises/mpi/get_compute_node_interactive.sh

@@ -1 +1 @@
-salloc --nodes 1 --cpus-per-task=1 --qos interactive --time 00:45:00 --constraint cpu --ntasks-per-node=4 --account=ntrain1
+salloc --nodes 1 --cpus-per-task=1 --qos interactive --time 00:45:00 --constraint cpu --ntasks-per-node=4 --account=ntrain7

exercises/mpi/get_compute_node_interactive_gpc.sh

@@ -0,0 +1 @@
+salloc -N 1 -p t4dws --time 00:45:00 --gpus-per-node=4

exercises/mpi/job_mpi_multinode.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-#SBATCH -A ntrain1
+#SBATCH -A ntrain7
 #SBATCH -C cpu
 #SBATCH -q regular
 #SBATCH --output=slurm_mpi_multinode.out
@@ -10,13 +10,8 @@
 # Load the latest Julia Module
 ml load julia
 
-# This will load the activate.sh in the root path of this repository
-# IMPORTATION: for this relative path to work, you need to be in this
-# directory when running `sbatch`
-source ../../activate.sh
-
 # Run the Julia code -- we're usign `srun` to launch Julia. This is necessary
 # to configure MPI. If you tried to use `MPI.Init()` outside of an srun, then
 # the program will crash. Note also that you can't run an srun _insite_ of
 # another srun.
-srun julia -e 'do_save=true; include("diffusion_2d_mpi.jl");'
+srun julia --project -e 'do_save=true; include("diffusion_2d_mpi.jl");'

exercises/mpi/job_mpi_multinode_gcp.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+#SBATCH --output=slurm_mpi_multinode.out
+#SBATCH --time=00:05:00
+#SBATCH --nodes=4
+#SBATCH --ntasks=16
+#SBATCH --gpus-per-node=4
+#SBATCH -p t4dws
+
+# Load the latest Julia Module
+ml load julia
+
+# Run the Julia code -- we're usign `srun` to launch Julia. This is necessary
+# to configure MPI. If you tried to use `MPI.Init()` outside of an srun, then
+# the program will crash. Note also that you can't run an srun _insite_ of
+# another srun.
+srun julia --project -e 'do_save=true; include("diffusion_2d_mpi.jl");'

exercises/mpi/job_mpi_singlenode.sh

@@ -1,5 +1,5 @@
 #!/bin/bash
-#SBATCH -A ntrain1
+#SBATCH -A ntrain7
 #SBATCH -C cpu
 #SBATCH -q regular
 #SBATCH --output=slurm_mpi_singlenode.out
@@ -10,13 +10,8 @@
 # Load the latest Julia Module
 ml load julia
 
-# This will load the activate.sh in the root path of this repository
-# IMPORTATION: for this relative path to work, you need to be in this
-# directory when running `sbatch`
-source ../../activate.sh
-
 # Run the Julia code -- we're usign `srun` to launch Julia. This is necessary
 # to configure MPI. If you tried to use `MPI.Init()` outside of an srun, then
 # the program will crash. Note also that you can't run an srun _insite_ of
 # another srun.
-srun julia diffusion_2d_mpi.jl
+srun julia --project diffusion_2d_mpi.jl

exercises/mpi/job_mpi_singlenode_gcp.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+#SBATCH --output=slurm_mpi_singlenode.out
+#SBATCH --time=00:05:00
+#SBATCH --nodes=1
+#SBATCH --ntasks=4
+#SBATCH --gpus-per-node=4
+#SBATCH -p t4dws
+
+# Load the latest Julia Module
+ml load julia
+
+# Run the Julia code -- we're usign `srun` to launch Julia. This is necessary
+# to configure MPI. If you tried to use `MPI.Init()` outside of an srun, then
+# the program will crash. Note also that you can't run an srun _insite_ of
+# another srun.
+srun julia --project diffusion_2d_mpi.jl