duplicate

Author: WeisongZhao

imagepy/menus/Image/Adjust/enhanceContrast_plg.py

@@ -5,12 +5,13 @@
 from imagepy.core.engine import Filter
 from skimage import exposure
 import numpy as np
+
 class Plugin(Filter):
     title = 'Enhance contrast'
     note = ['all', 'auto_msk', 'auto_snap','preview']
     para = {'percentage': 0.3}
     view = [(float, 'percentage', (0,100), 1, 'Saturated pixels', '%')]
 
     def run(self, ips, snap, img, para = None):
-        p2, p98 = np.percentile(snap, (0, 100 - para['percentage']))
-        exposure.rescale_intensity(snap, in_range=(p2, p98))
+        up, down = np.percentile(snap, (0, 100 - para['percentage']))
+        exposure.rescale_intensity(snap, in_range=(up, down))

imagepy/menus/Image/duplicate_plg.py

@@ -14,12 +14,18 @@ class Duplicate(Simple):
     title = 'Duplicate'
     note = ['all']
 
-    para = {'name':'Undefined','stack':True}
+    # para = {'name':'Undefined','start':1,'end':2,'stack':True}
 
     def load(self, ips):
+        self.slength = len(ips.imgs)
+        self.para = {'name':'Undefined','start':1,'end':self.slength,'stack':True}
         self.para['name'] = ips.title+'-copy'
         self.view = [(str, 'name', 'Name', '')]
         if ips.get_nslices()>1:
+            self.view.append((int, 'start', 
+                (1,self.slength),0,'Start slice','1~%d'%self.slength))
+            self.view.append((int, 'end', 
+                (1,self.slength),0,'End slice','1~%d'%self.slength))
             self.view.append((bool, 'stack', 'duplicate stack'))
         return True
     #process
@@ -42,6 +48,7 @@ def run(self, ips, imgs, para = None):
                     ipsd.backimg = ips.backimg[sr, sc]
                 '''
         elif ips.get_nslices()>1 and self.para['stack']:
+            imgs=imgs[para['start']-1: para['end']]
             if ips.roi == None:
                 if ips.is3d:imgs=imgs.copy()
                 else:imgs = [i.copy() for i in imgs]

imagepy/menus/Plugins/temporal_plg.py

@@ -31,13 +31,16 @@ def color_code(img, lut):
 class Plugin(Simple):
     title = 'Temporal color-code'
     note = ['all', 'stack']
-    para = {'LUT':'Jet',
-            'Start image':1,
-            'End image': 2,
-            'Creatbar':True}
-
+    # para = {'LUT':'Jet',
+    #         'Start image':1,
+    #         'End image': 2,
+    #         'Creatbar':True}
     def load(self, ips): 
         self.slength = len(ips.imgs)
+        self.para = {'LUT':'Jet',
+            'Start image':1,
+            'End image': self.slength,
+            'Creatbar':True}
         self.para['End image'] = self.slength
         self.view = [(list, 'LUT', list(ColorManager.luts.keys()), str, 'LUT',''),
             (int, 'Start image', (1,self.slength),0,'Start image','1~%d'%self.slength),