Correct wSST_CC. Remove V_r parameter

Daniel Incicau · Daniel Incicau · commit 96954765ce1b · 2023-01-18T19:57:32.000+01:00
diff --git a/notebooks/layer5_CC_CS_connection.ipynb b/notebooks/layer5_CC_CS_connection.ipynb
@@ -80,15 +80,14 @@
     "E_i  = -80*mV   # Inhibitory synaptic reversal potential\n",
     "\n",
     "V_t  = -50*mV   # spiking threashold\n",
-    "V_r  = E_l      # reset potential\n",
     "\n",
     "c_d = 2600 * pA  # back-propagates somatic spikes to to the dendrites\n",
     "g_s = 1300 * pA  # propagates dendritic regenerative activity to soma\n",
     "g_d = 1200 * pA  # propagates dendritic regenerative activity to denderites\n",
     "\n",
     "### Connectivity weight & probabilities\n",
     "# CS_CS 0, CS_SST 1, CS_PV 2, SST_CS 3, PV_CS 4, CC_CC 5, CC_SST 6, CC_PV 7, SST_CC 8, PV_CC 9, CC_CS 10, SST_PV 11, SST_SST 12, PV_PV 13, PV_SST 14, \n",
-    "conn_weights = [0.27, 0.05, 1.01, 0.19, 0.32, 0.24, 0.09, 0.48, 0.19, 0.52, 0.19, 0.18, 0.19, 0.47, 0.44] # in nS\n",
+    "conn_weights = [0.27, 0.05, 1.01, 0.19, 0.32, 0.24, 0.09, 0.48, 0.11, 0.52, 0.19, 0.18, 0.19, 0.47, 0.44] # in nS\n",
     "if USE_SYNAPSE_PROBS: \n",
     "    # CS_CS 0, CS_SST 1, CS_PV 2, SST_CS 3, PV_CS 4, CC_CC 5, CC_SST 6, CC_PV 7, SST_CC 8, PV_CC 9, CC_CS 10, SST_PV 11, SST_SST 12, PV_PV 13, PV_SST 14, \n",
     "    conn_probs = [0.16, 0.23, 0.18, 0.52, 0.43, 0.06, 0.26, 0.22, 0.13, 0.38, 0.09, 0.29, 0.1, 0.5, 0.14]\n",
diff --git a/notebooks/layer5_SST_Soma_selectivity.ipynb b/notebooks/layer5_SST_Soma_selectivity.ipynb
@@ -81,15 +81,14 @@
     "E_i  = -80*mV   # Inhibitory synaptic reversal potential\n",
     "\n",
     "V_t  = -50*mV   # spiking threashold\n",
-    "V_r  = E_l      # reset potential\n",
     "\n",
     "c_d = 2600 * pA  # back-propagates somatic spikes to to the dendrites\n",
     "g_s = 1300 * pA  # propagates dendritic regenerative activity to soma\n",
     "g_d = 1200 * pA  # propagates dendritic regenerative activity to denderites\n",
     "\n",
     "### Connectivity weight & probabilities\n",
     "# CS_CS 0, CS_SST 1, CS_PV 2, SST_CS 3, PV_CS 4, CC_CC 5, CC_SST 6, CC_PV 7, SST_CC 8, PV_CC 9, CC_CS 10, SST_PV 11, SST_SST 12, PV_PV 13, PV_SST 14, \n",
-    "conn_weights = [0.27, 0.05, 1.01, 0.19, 0.32, 0.24, 0.09, 0.48, 0.19, 0.52, 0.19, 0.18, 0.19, 0.47, 0.44] # in nS\n",
+    "conn_weights = [0.27, 0.05, 1.01, 0.19, 0.32, 0.24, 0.09, 0.48, 0.11, 0.52, 0.19, 0.18, 0.19, 0.47, 0.44] # in nS\n",
     "if USE_SYNAPSE_PROBS: \n",
     "    # CS_CS 0, CS_SST 1, CS_PV 2, SST_CS 3, PV_CS 4, CC_CC 5, CC_SST 6, CC_PV 7, SST_CC 8, PV_CC 9, CC_CS 10, SST_PV 11, SST_SST 12, PV_PV 13, PV_SST 14, \n",
     "    conn_probs = [0.16, 0.23, 0.18, 0.52, 0.43, 0.06, 0.26, 0.22, 0.13, 0.38, 0.09, 0.29, 0.1, 0.5, 0.14]\n",
diff --git a/notebooks/layer5_sandbox.ipynb b/notebooks/layer5_sandbox.ipynb
@@ -81,15 +81,14 @@
     "E_i  = -80*mV   # Inhibitory synaptic reversal potential\n",
     "\n",
     "V_t  = -50*mV   # spiking threashold\n",
-    "V_r  = E_l      # reset potential\n",
     "\n",
     "c_d = 2600 * pA  # back-propagates somatic spikes to to the dendrites\n",
     "g_s = 1300 * pA  # propagates dendritic regenerative activity to soma\n",
     "g_d = 1200 * pA  # propagates dendritic regenerative activity to denderites\n",
     "\n",
     "### Connectivity weight & probabilities\n",
     "# CS_CS 0, CS_SST 1, CS_PV 2, SST_CS 3, PV_CS 4, CC_CC 5, CC_SST 6, CC_PV 7, SST_CC 8, PV_CC 9, CC_CS 10, SST_PV 11, SST_SST 12, PV_PV 13, PV_SST 14, \n",
-    "conn_weights = [0.27, 0.05, 1.01, 0.19, 0.32, 0.24, 0.09, 0.48, 0.19, 0.52, 0.19, 0.18, 0.19, 0.47, 0.44] # in nS\n",
+    "conn_weights = [0.27, 0.05, 1.01, 0.19, 0.32, 0.24, 0.09, 0.48, 0.11, 0.52, 0.19, 0.18, 0.19, 0.47, 0.44] # in nS\n",
     "if USE_SYNAPSE_PROBS: \n",
     "    # CS_CS 0, CS_SST 1, CS_PV 2, SST_CS 3, PV_CS 4, CC_CC 5, CC_SST 6, CC_PV 7, SST_CC 8, PV_CC 9, CC_CS 10, SST_PV 11, SST_SST 12, PV_PV 13, PV_SST 14, \n",
     "    conn_probs = [0.16, 0.23, 0.18, 0.52, 0.43, 0.06, 0.26, 0.22, 0.13, 0.38, 0.09, 0.29, 0.1, 0.5, 0.14]\n",
diff --git a/notebooks/test_different_inputs.ipynb b/notebooks/test_different_inputs.ipynb
@@ -57,7 +57,6 @@
     "E_i  = -80*mV   # Inhibitory synaptic reversal potential\n",
     "\n",
     "V_t  = -50*mV   # spiking threashold\n",
-    "V_r  = E_l      # reset potential\n",
     "\n",
     "c_d = 2600 * pA  # back-propagates somatic spikes to to the dendrites\n",
     "g_s = 1300 * pA  # propagates dendritic regenerative activity to soma\n",
diff --git a/notebooks/test_single_neurons.ipynb b/notebooks/test_single_neurons.ipynb
@@ -54,7 +54,6 @@
     "E_i  = -80*mV   # Inhibitory synaptic reversal potential\n",
     "\n",
     "V_t  = -50*mV   # spiking threashold\n",
-    "V_r  = E_l      # reset potential\n",
     "\n",
     "c_d = 2600 * pA  # back-propagates somatic spikes to to the dendrites\n",
     "g_s = 1300 * pA  # propagates dendritic regenerative activity to soma\n",
diff --git a/parameters.py b/parameters.py
@@ -33,7 +33,6 @@
     "E_i":  -80 * mV,  # Inhibitory synaptic reversal potential
 
     "V_t":  -50 * mV,  # spiking threshold
-    "V_r":  -70 * mV,  # reset potential ~ same as E_l ~
 
     "c_d": 2600 * pA,  # back-propagates somatic spikes to the dendrites
     "g_s": 1300 * pA,  # propagates dendritic regenerative activity to soma
@@ -59,7 +58,7 @@
     "pSST_CS_soma":   [0.5, 0.5,   1,  1],  # represents fraction of `pSST_CS*pSST_CS_weight` going to the CS soma; {1-this} goes to CS dendrite
     # `pSST_CS_soma` and `pSST_CC_soma` are taken in pairs
     "pSST_CC_soma":   [0.5,   1, 0.5,  1],   # represents fraction of `pSST_CC*pSST_CC_weight` going to the CC soma;  {1-this} goes to CC dendrite
-    "wSST_CC": 0.19,
+    "wSST_CC": 0.11,
     "pSST_CC": 0.13,
     "pSST_CC_weight": 1,  # represents fraction of `pSST_CC` for connection probabilities
 
