Included pairs file ignored

[riccile]

Hi,
I am trying to run just a subset of pairs using an included pairs file but CS seems to be ignoring it.

In the attached files, I include only 3 pairs of the 11 nodes in the point file but when I run the code it says the total number of pair solves = 55 and starts computing all of them.

Any idea why I'm running into this issue? Thanks for your help!

Link:
https://drive.google.com/drive/folders/1xgvgebBcQy8eVHVd1KWPinilyHFq77Qb?usp=sharing

[mariesoret]

hi @ranjanan ,
I encountered the same problem as @riccile. I don't see how #374 solve this as I am not using polygons in points file.
I am using circuitscape with raster data on pairwise mode with a simple pair.txt file but when I run the job circuitscape compute all pairs regardless of the pair list.
link to my files : [(https://drive.google.com/drive/folders/1IjNFiCot8rpc3XkvfUqnMEKruPTygAE-?usp=sharing)]

[riccile]

I found that it partly solved the problem. The file isn't ignored but it runs all pairs that have both nodes included somewhere in the file. For example,  mode include 1 2 1 3 will run 1-2, 1-3, and 2-3.   Hope that helps find the problem. On 1/5/2023 11:22:25 AM, mariesoret ***@***.***> wrote: hi @ranjanan [https://github.com/ranjanan] , I encountered the same problem as @riccile [https://github.com/riccile]. I don't see how #374 [#374] solve this as I am not using polygons in points file. I am using circuitscape with raster data on pairwise mode with a simple pair.txt file but when I run the job circuitscape compute all pairs regardless of the pair list. link to my files : [(https://drive.google.com/drive/folders/1IjNFiCot8rpc3XkvfUqnMEKruPTygAE-?usp=sharing)] — Reply to this email directly, view it on GitHub [#341 (comment)], or unsubscribe [https://github.com/notifications/unsubscribe-auth/AJYR5NXFIGTYQCKAO76LBMDWQ4GODANCNFSM5KEMPCYA]. You are receiving this because you were mentioned.Message ID: ***@***.***>

[mariesoret]

HI, I try to run the same data with a distance matrix file instead of the pair list file and I have the same issue.
ao_exp_dist.txt

[ranjanan]

Thanks for bringing these up. @riccile thank you for that simpler clarifying example. I shall test with that.

[FaustiniG]

Hi, I have the same issue.
Did anyone solve the issue?

Previously I was running a raster circuitscape that had to solve 25425 pairs (between patches), and I got OutofMemory() error.

Thus I selected only some pairs between patches (2025), but circuitscape still run through all the pairs.

If I look at the .out file, it starts from the first patch in order of ID, not in order of rows.
I see that at each calculation, it calculates all the possible pairs from this first patch.

I also see that at every calculation, the last one is erased by the following one.
Probably only when it gets a pair that is present in the include.txt file, the output is recorded.
But I am not sure.

I hope it can help to find the problem.

[laurenthuber]

Hi, Same problem Circuiscape is computing 133903 pairs even having set the included pair file with 1345 pair listed. What happened?
Thanks a lot

[LLeiSong]

I think the problem is still there. Any updates or solutions to bypass this issue?

[olliewearn]

I can confirm that this issue still seems to exist in Circuitscape v.5.14.

The include/exclude files don't function like in Circuitscape v.4. For example I specified an include file with 26,194 pair combinations, but it still churns through all 31,125 combinations. In Circuitscape v.4 it correctly only goes through the pair combinations I specified.

I am using pairwise mode with raster data. My include file is the two-column format (columns "mode" and "include", as specified in the help docs).