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lines changed Original file line number Diff line number Diff line change @@ -87,7 +87,7 @@ The `sbatch` file `workflow.sh` will reference the `CWL` file `workflow.cwl` whe
8787# SBATCH --mem-per-cpu=1G
8888# SBATCH --nodes=1
8989# SBATCH --cpus-per-task=2
90- # SBATCH --partition=<partition name>
90+ # SBATCH --partition=small
9191
9292source /projappl/< project_nnnnnnn> /venv/bin/activate
9393
@@ -98,7 +98,7 @@ export TOIL_SLURM_ARGS="--account=project_nnnnnnn --partition=small"
9898export CWL_SINGULARITY_CACHE=$WORKDIR /singularity
9999unset XDG_RUNTIME_DIR
100100
101- TOIL_SLURM_ARGS=" --account=<project_nnnnnnn> --partition=<partition name> " toil-cwl-runner \
101+ TOIL_SLURM_ARGS=" --account=<project_nnnnnnn> --partition=small " toil-cwl-runner \
102102 --jobStore $WORKDIR /< job store name> \
103103 --workDir $SCRATCH /< work dir name> \
104104 --tmpdir-prefix $TMPDIR /< tmp name> \
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