ignoring mypy errors

Author: tclose

.github/workflows/ci-cd.yml

@@ -23,6 +23,8 @@ jobs:
     defaults:
       run:
         shell: bash -l {0}
+    env:
+      PIP_BREAK_SYSTEM_PACKAGES: 1
     steps:
     - name: Checkout
       uses: actions/checkout@v2
@@ -39,15 +41,13 @@ jobs:
       with:
         python-version: ${{ matrix.python-version }}
     - name: Update build tools
-      run: python3 -m pip install --break-system-packages --upgrade pip
+      run: python3 -m pip install --upgrade pip
     - name: Install Package
-      run: python3 -m pip install --break-system-packages -e .[test]
+      run: python3 -m pip install -e .[test]
     - name: Install Extras Package
-      run: python3 -m pip install --break-system-packages -e ./extras[test]
-    - name: Install types
-      run: PIP_BREAK_SYSTEM_PACKAGES=1 mypy --install-types --non-interactive .
+      run: python3 -m pip install -e ./extras[test]
     - name: MyPy
-      run: mypy .
+      run: mypy --install-types --non-interactive .
     - name: Pytest
       run: pytest -vvs --cov fileformats --cov-config .coveragerc --cov-report xml .
     - name: Upload coverage to Codecov

.pre-commit-config.yaml

@@ -30,3 +30,10 @@ repos:
       rev: v1.11.2
       hooks:
           - id: mypy
+            args:
+                [
+                    --strict,
+                    --install-types,
+                    --non-interactive,
+                    --no-warn-unused-ignores,
+                ]

extras/fileformats/extras/application/archive.py

@@ -123,7 +123,7 @@ def extract_tar(
     compression_type: str = "*",
 ) -> Path:
 
-    if extract_dir is attrs.NOTHING:
+    if extract_dir is attrs.NOTHING:  # type: ignore[comparison-overlap]
         extract_dir = Path(tempfile.mkdtemp())
     else:
         extract_dir = extract_dir.absolute()
@@ -167,10 +167,10 @@ def create_zip(
             "Can only archive file-sets with single paths currently"
         )
 
-    if out_file is attrs.NOTHING:
+    if out_file is attrs.NOTHING:  # type: ignore[comparison-overlap]
         out_file = Path(Path(in_file).name + ".zip")
 
-    if base_dir is attrs.NOTHING:
+    if base_dir is attrs.NOTHING:  # type: ignore[comparison-overlap]
         base_dir = Path(in_file).parent
 
     out_file = out_file.absolute()
@@ -212,7 +212,7 @@ def create_zip(
 @pydra.mark.annotate({"return": {"out_file": Path}})  # type: ignore[misc]
 def extract_zip(in_file: Zip, extract_dir: Path) -> Path:
 
-    if extract_dir is attrs.NOTHING:
+    if extract_dir is attrs.NOTHING:  # type: ignore[comparison-overlap]
         extract_dir = Path(tempfile.mkdtemp())
     else:
         extract_dir = extract_dir.absolute()